1 Response_reg#1
6-114 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:6:9.4e-19:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29637_RS03560
Response regulator LytTR family
Clostridioides difficile · GCF_003482325
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482325#CDIF29637_RS03560Stable P2CS identifier used across views.
GenomeGCF_003482325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 236 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:1.48e-19:227:93:98- Raw architecture: Response_reg:6:9.4e-19:114:112:111#LytTR:141:1.48e-19:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482325::NZ_CP016106.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span698047-698757Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29637_00700RefSeq proteinWP_021401041.1
Context group ID
GCF_003482325::NZ_CP016106.1::G00013Context members
CDIF29637_RS03560
Partner locus tags
CDIF29637_RS03560
Partner old locus tags
CDIF29637_00700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021401041.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29637_RS03560Primary locus identifier stored in the genes table.
Old locus tagCDIF29637_00700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP016106.1Sequence record reported by the local genomic context database.
Genomic interval698 047-698 757 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span698 047-698 757 ntGCF_003482325::NZ_CP016106.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482325::NZ_CP016106.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP016106.1All displayed genes belong to this local TCS context.
Neighborhood span698 047-698 757 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
698 047 nt698 757 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF29637_RS03560GCF_003482325#CDIF29637_RS03560
RRLytTRCurrent focus
698 047-698 757 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450365#QKQ_RS03850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989905
Simplified PFAM architecture for RROC_0989905
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_0989905
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 141-226 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_000450365#QKQ_RS03850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482325
AssemblyASM348232v1 · Complete Genomehaploid
Genome composition4 114 585 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 46 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key