1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:3.07e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29629_RS05345
Response regulator OmpR family
Clostridioides difficile · GCF_003482305
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482305#CDIF29629_RS05345Stable P2CS identifier used across views.
GenomeGCF_003482305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:148:1.23e-29:223:76:77- Raw architecture: Response_reg:4:3.07e-31:113:111:111#Trans_reg_C:148:1.23e-29:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482305::NZ_CP016104.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1109827-1111762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29629_01061RefSeq proteinWP_070117196.1
Context group ID
GCF_003482305::NZ_CP016104.1::G00016Context members
CDIF29629_RS05345CDIF29629_RS05350
Partner locus tags
CDIF29629_RS05345CDIF29629_RS05350
Partner old locus tags
CDIF29629_01061CDIF29629_01062
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070117196.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29629_RS05345Primary locus identifier stored in the genes table.
Old locus tagCDIF29629_01061Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP016104.1Sequence record reported by the local genomic context database.
Genomic interval1 109 827-1 110 510 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 109 827-1 111 762 ntGCF_003482305::NZ_CP016104.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482305::NZ_CP016104.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP016104.1All displayed genes belong to this local TCS context.
Neighborhood span1 109 827-1 111 762 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 109 827 nt1 111 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF29629_RS05345GCF_003482305#CDIF29629_RS05345
RROmpRCurrent focus
1 109 827-1 110 510 nt · Forward (+)
CDIF29629_RS05350GCF_003482305#CDIF29629_RS05350
HKClassic
1 110 521-1 111 762 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757585#BW25_RS11920Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1362203
Simplified PFAM architecture for RROC_1362203
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1362203
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_001757585#BW25_RS11920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482305
AssemblyASM348230v1 · Complete Genomehaploid
Genome composition4 111 235 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key