1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.21e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29627_RS17570
Response regulator OmpR family
Clostridioides difficile · GCF_003482255
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_003482255#CDIF29627_RS17570Stable P2CS identifier used across views.
GenomeGCF_003482255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.57e-28:232:78:77- Raw architecture: Response_reg:5:1.21e-36:114:111:111#Trans_reg_C:155:4.57e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_003482255::NZ_CP016102.1::G00052
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3786111-3791835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29627_03514RefSeq proteinWP_003432359.1
Context group ID
GCF_003482255::NZ_CP016102.1::G00052Context members
CDIF29627_RS17565CDIF29627_RS17570CDIF29627_RS17575CDIF29627_RS17580CDIF29627_RS17585
Partner locus tags
CDIF29627_RS17565CDIF29627_RS17570CDIF29627_RS17575CDIF29627_RS17580CDIF29627_RS17585
Partner old locus tags
CDIF29627_03513CDIF29627_03514CDIF29627_03515CDIF29627_03516CDIF29627_03517
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003432359.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3U0K6Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3U0K6_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29627_RS17570Primary locus identifier stored in the genes table.
Old locus tagCDIF29627_03514Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP016102.1Sequence record reported by the local genomic context database.
Genomic interval3 787 262-3 787 960 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 786 111-3 791 835 ntGCF_003482255::NZ_CP016102.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482255::NZ_CP016102.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP016102.1All displayed genes belong to this local TCS context.
Neighborhood span3 786 111-3 791 835 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 786 111 nt3 791 835 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
CDIF29627_RS17565GCF_003482255#CDIF29627_RS17565
HKClassic
3 786 111-3 787 226 nt · Reverse (-)
CDIF29627_RS17570GCF_003482255#CDIF29627_RS17570
RROmpRCurrent focus
3 787 262-3 787 960 nt · Reverse (-)
CDIF29627_RS17575GCF_003482255#CDIF29627_RS17575
RROmpR
3 788 341-3 789 021 nt · Reverse (-)
CDIF29627_RS17580GCF_003482255#CDIF29627_RS17580
HKClassic
3 789 071-3 791 086 nt · Reverse (-)
CDIF29627_RS17585GCF_003482255#CDIF29627_RS17585
RROmpR
3 791 158-3 791 835 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS16905Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120124
Simplified PFAM architecture for RROC_1120124
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1120124
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS16905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482255
AssemblyASM348225v1 · Complete Genomehaploid
Genome composition4 209 547 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key