1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000574:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28670_RS17795
Histidine kinase, Classic
Clostridioides difficile · GCF_003482225
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_003482225#CDIF28670_RS17795Stable P2CS identifier used across views.
GenomeGCF_003482225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:3.68e-30:668:104:109- Raw architecture: HisKA:449:0.00000000574:514:66:64#HATPase_c:565:3.68e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_003482225::NZ_CP012312.1::G00051
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3765892-3771616Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28670_03565RefSeq proteinWP_022617553.1
Context group ID
GCF_003482225::NZ_CP012312.1::G00051Context members
CDIF28670_RS17780CDIF28670_RS17785CDIF28670_RS17790CDIF28670_RS17795CDIF28670_RS17800
Partner locus tags
CDIF28670_RS17780CDIF28670_RS17785CDIF28670_RS17790CDIF28670_RS17795CDIF28670_RS17800
Partner old locus tags
CDIF28670_03562CDIF28670_03563CDIF28670_03564CDIF28670_03565CDIF28670_03566
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022617553.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28670_RS17795Primary locus identifier stored in the genes table.
Old locus tagCDIF28670_03565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012312.1Sequence record reported by the local genomic context database.
Genomic interval3 768 852-3 770 867 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 765 892-3 771 616 ntGCF_003482225::NZ_CP012312.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482225::NZ_CP012312.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012312.1All displayed genes belong to this local TCS context.
Neighborhood span3 765 892-3 771 616 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 765 892 nt3 771 616 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
CDIF28670_RS17780GCF_003482225#CDIF28670_RS17780
HKClassic
3 765 892-3 767 007 nt · Reverse (-)
CDIF28670_RS17785GCF_003482225#CDIF28670_RS17785
RROmpR
3 767 043-3 767 741 nt · Reverse (-)
CDIF28670_RS17790GCF_003482225#CDIF28670_RS17790
RROmpR
3 768 122-3 768 802 nt · Reverse (-)
CDIF28670_RS17795GCF_003482225#CDIF28670_RS17795
HKClassicCurrent focus
3 768 852-3 770 867 nt · Reverse (-)
CDIF28670_RS17800GCF_003482225#CDIF28670_RS17800
RROmpR
3 770 939-3 771 616 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531625#BN168_RS16720Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842640
Simplified PFAM architecture for HKOC_0842640
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842640
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000531625#BN168_RS16720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482225
AssemblyASM348222v1 · Complete Genomehaploid
Genome composition4 191 653 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key