1 Response_reg#1
6-116 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:6:8.15e-34:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28670_RS03910
Response regulator OmpR family
Clostridioides difficile · GCF_003482225
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482225#CDIF28670_RS03910Stable P2CS identifier used across views.
GenomeGCF_003482225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 32.9% of protein
Raw token
Trans_reg_C:149:3.76e-22:224:76:77- Raw architecture: Response_reg:6:8.15e-34:116:112:111#Trans_reg_C:149:3.76e-22:224:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482225::NZ_CP012312.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span766935-768988Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28670_00772RefSeq proteinWP_074097663.1
Context group ID
GCF_003482225::NZ_CP012312.1::G00013Context members
CDIF28670_RS03910CDIF28670_RS03915
Partner locus tags
CDIF28670_RS03910CDIF28670_RS03915
Partner old locus tags
CDIF28670_00772CDIF28670_00773
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074097663.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28670_RS03910Primary locus identifier stored in the genes table.
Old locus tagCDIF28670_00772Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012312.1Sequence record reported by the local genomic context database.
Genomic interval766 935-767 630 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span766 935-768 988 ntGCF_003482225::NZ_CP012312.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482225::NZ_CP012312.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012312.1All displayed genes belong to this local TCS context.
Neighborhood span766 935-768 988 nt2 054 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
766 935 nt768 988 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF28670_RS03910GCF_003482225#CDIF28670_RS03910
RROmpRCurrent focus
766 935-767 630 nt · Forward (+)
CDIF28670_RS03915GCF_003482225#CDIF28670_RS03915
HKClassic
767 627-768 988 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482225#CDIF28670_RS03910The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1168330
Simplified PFAM architecture for RROC_1168330
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1168330
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_003482225#CDIF28670_RS03910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482225
AssemblyASM348222v1 · Complete Genomehaploid
Genome composition4 191 653 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key