1 Response_reg#1
10-126 aa · 117 aa · 48.3% of protein
Raw token
Response_reg:10:3.14e-22:126:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28670_RS03430
Response regulator LytTR family
Clostridioides difficile · GCF_003482225
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482225#CDIF28670_RS03430Stable P2CS identifier used across views.
GenomeGCF_003482225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 242 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
147-231 aa · 85 aa · 35.1% of protein
Raw token
LytTR:147:4.01e-18:231:92:98- Raw architecture: Response_reg:10:3.14e-22:126:119:111#LytTR:147:4.01e-18:231:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482225::NZ_CP012312.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span672780-673490Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28670_00685RefSeq proteinWP_022616723.1
Context group ID
GCF_003482225::NZ_CP012312.1::G00010Context members
CDIF28670_RS03430
Partner locus tags
CDIF28670_RS03430
Partner old locus tags
CDIF28670_00685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022616723.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28670_RS03430Primary locus identifier stored in the genes table.
Old locus tagCDIF28670_00685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012312.1Sequence record reported by the local genomic context database.
Genomic interval672 780-673 490 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span672 780-673 490 ntGCF_003482225::NZ_CP012312.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482225::NZ_CP012312.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012312.1All displayed genes belong to this local TCS context.
Neighborhood span672 780-673 490 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
672 780 nt673 490 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF28670_RS03430GCF_003482225#CDIF28670_RS03430
RRLytTRCurrent focus
672 780-673 490 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482225#CDIF28670_RS03430The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0848590
Simplified PFAM architecture for RROC_0848590
PFAM domain coverage: 200 / 242 aa (82.6%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-125] | LytTR[148-231]
- Domain count: 2
- Matched identifier: RROC_0848590
- Positioned domains: Response_reg 10-125 ; Response_reg 10-125 ; LytTR 148-231 ; LytTR 148-231
Cluster members and taxonomy
Representative gene: GCF_003482225#CDIF28670_RS03430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482225
AssemblyASM348222v1 · Complete Genomehaploid
Genome composition4 191 653 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key