1 HisKA#1
558-624 aa · 67 aa · 8.6% of protein
Raw token
HisKA:558:1.83e-18:624:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29020_RS14040
Histidine kinase, Classic
Clostridioides difficile · GCF_003482165
ClassHKTypeClassicLength778 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482165#CDIF29020_RS14040Stable P2CS identifier used across views.
GenomeGCF_003482165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 778 aa (22.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
671-775 aa · 105 aa · 13.5% of protein
Raw token
HATPase_c:671:0.000000000141:775:110:109- Raw architecture: HisKA:558:1.83e-18:624:67:64#HATPase_c:671:0.000000000141:775:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482165::NZ_CP012325.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2908729-2911753Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29020_02758RefSeq proteinWP_003416282.1
Context group ID
GCF_003482165::NZ_CP012325.1::G00037Context members
CDIF29020_RS14040CDIF29020_RS14045
Partner locus tags
CDIF29020_RS14040CDIF29020_RS14045
Partner old locus tags
CDIF29020_02758CDIF29020_02759
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003416282.1Primary protein accession used for annex mappings.
UniProt accessionD5Q276Primary UniProt accession resolved in the annex database.
UniProt IDD5Q276_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29020_RS14040Primary locus identifier stored in the genes table.
Old locus tagCDIF29020_02758Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012325.1Sequence record reported by the local genomic context database.
Genomic interval2 908 729-2 911 065 nt2 337 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 908 729-2 911 753 ntGCF_003482165::NZ_CP012325.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482165::NZ_CP012325.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012325.1All displayed genes belong to this local TCS context.
Neighborhood span2 908 729-2 911 753 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 908 729 nt2 911 753 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF29020_RS14040GCF_003482165#CDIF29020_RS14040
HKClassicCurrent focus
2 908 729-2 911 065 nt · Reverse (-)
CDIF29020_RS14045GCF_003482165#CDIF29020_RS14045
RROmpR
2 911 031-2 911 753 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0212650Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0598846
Simplified PFAM architecture for HKOC_0598846
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0598846
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0212650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482165
AssemblyASM348216v1 · Complete Genomehaploid
Genome composition4 139 418 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key