1 H_kinase_N#1
12-142 aa · 131 aa · 27.9% of protein
Raw token
H_kinase_N:12:7.33e-36:142:132:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29020_RS10560
Histidine kinase, Classic
Clostridioides difficile · GCF_003482165
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482165#CDIF29020_RS10560Stable P2CS identifier used across views.
GenomeGCF_003482165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
H_kinase_NHisKA_2HATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 469 aa (64.8%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA_2#2
276-350 aa · 75 aa · 16.0% of protein
Raw token
HisKA_2:276:3.39e-17:350:76:763 HATPase_c#3
370-467 aa · 98 aa · 20.9% of protein
Raw token
HATPase_c:370:0.000000589:467:114:109- Raw architecture: H_kinase_N:12:7.33e-36:142:132:139#HisKA_2:276:3.39e-17:350:76:76#HATPase_c:370:0.000000589:467:114:109
- Domain description: 1 H_kinase_N,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482165::NZ_CP012325.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2148623-2150600Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29020_02054RefSeq proteinWP_003423979.1
Context group ID
GCF_003482165::NZ_CP012325.1::G00028Context members
CDIF29020_RS10555CDIF29020_RS10560
Partner locus tags
CDIF29020_RS10555CDIF29020_RS10560
Partner old locus tags
CDIF29020_02053CDIF29020_02054
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003423979.1Primary protein accession used for annex mappings.
UniProt accessionD5Q482Primary UniProt accession resolved in the annex database.
UniProt IDD5Q482_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29020_RS10560Primary locus identifier stored in the genes table.
Old locus tagCDIF29020_02054Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012325.1Sequence record reported by the local genomic context database.
Genomic interval2 149 191-2 150 600 nt1 410 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 148 623-2 150 600 ntGCF_003482165::NZ_CP012325.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482165::NZ_CP012325.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012325.1All displayed genes belong to this local TCS context.
Neighborhood span2 148 623-2 150 600 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 148 623 nt2 150 600 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF29020_RS10555GCF_003482165#CDIF29020_RS10555
RRAmiR_NasR
2 148 623-2 149 198 nt · Forward (+)
CDIF29020_RS10560GCF_003482165#CDIF29020_RS10560
HKClassicCurrent focus
2 149 191-2 150 600 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164175#HMPREF0220_RS14035Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1727001
Simplified PFAM architecture for HKOC_1727001
PFAM domain coverage: 305 / 469 aa (65.0%)
1 aa469 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[6-141] | HisKA_2[276-350] | HATPase_c[373-466]
- Domain count: 3
- Matched identifier: HKOC_1727001
- Positioned domains: GAF_PdtaS 6-141 ; HisKA_2 276-350 ; HATPase_c 373-466
Cluster members and taxonomy
Representative gene: GCF_000164175#HMPREF0220_RS14035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482165
AssemblyASM348216v1 · Complete Genomehaploid
Genome composition4 139 418 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key