1 SBP_bac_3#1
58-278 aa · 221 aa · 33.3% of protein
Raw token
SBP_bac_3:58:2.27e-40:278:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28669_RS09310
Histidine kinase, Classic
Clostridioides difficile · GCF_003482125
ClassHKTypeClassicLength664 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482125#CDIF28669_RS09310Stable P2CS identifier used across views.
GenomeGCF_003482125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length664 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 664 aa (58.1%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa664 aa
Domain-by-domain annotation3 items
2 HisKA#2
446-508 aa · 63 aa · 9.5% of protein
Raw token
HisKA:446:0.000000000000041:508:63:643 HATPase_c#3
557-658 aa · 102 aa · 15.4% of protein
Raw token
HATPase_c:557:3.04e-23:658:103:109- Raw architecture: SBP_bac_3:58:2.27e-40:278:230:224#HisKA:446:0.000000000000041:508:63:64#HATPase_c:557:3.04e-23:658:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482125::NZ_CP012323.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1920461-1923777Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28669_01858RefSeq proteinWP_070112687.1
Context group ID
GCF_003482125::NZ_CP012323.1::G00028Context members
CDIF28669_RS09310CDIF28669_RS09315
Partner locus tags
CDIF28669_RS09310CDIF28669_RS09315
Partner old locus tags
CDIF28669_01858CDIF28669_01859
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070112687.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28669_RS09310Primary locus identifier stored in the genes table.
Old locus tagCDIF28669_01858Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012323.1Sequence record reported by the local genomic context database.
Genomic interval1 920 461-1 922 455 nt1 995 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 920 461-1 923 777 ntGCF_003482125::NZ_CP012323.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482125::NZ_CP012323.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012323.1All displayed genes belong to this local TCS context.
Neighborhood span1 920 461-1 923 777 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 920 461 nt1 923 777 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF28669_RS09310GCF_003482125#CDIF28669_RS09310
HKClassicCurrent focus
1 920 461-1 922 455 nt · Forward (+)
CDIF28669_RS09315GCF_003482125#CDIF28669_RS09315
RRNtrC
1 922 455-1 923 777 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757605#BW28_RS08035Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0860812
Simplified PFAM architecture for HKOC_0860812
PFAM domain coverage: 385 / 664 aa (58.0%)
1 aa664 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[60-277] | HisKA[448-509] | HATPase_c[555-659]
- Domain count: 3
- Matched identifier: HKOC_0860812
- Positioned domains: SBP_bac_3 60-277 ; HisKA 448-509 ; HATPase_c 555-659
Cluster members and taxonomy
Representative gene: GCF_001757605#BW28_RS08035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482125
AssemblyASM348212v1 · Complete Genomehaploid
Genome composition4 137 693 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key