1 HAMP#1
113-182 aa · 70 aa · 16.1% of protein
Raw token
HAMP:113:0.00000000000033:182:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA93_RS13565
Histidine kinase, Classic
Blautia sp. OF09-25XD · GCF_003482095
ClassHKTypeClassicLength434 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482095#DXA93_RS13565Stable P2CS identifier used across views.
GenomeGCF_003482095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 434 aa (55.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa434 aa
Domain-by-domain annotation3 items
2 HisKA#2
207-271 aa · 65 aa · 15.0% of protein
Raw token
HisKA:207:0.000000000000822:271:65:643 HATPase_c#3
319-425 aa · 107 aa · 24.7% of protein
Raw token
HATPase_c:319:1.03e-23:425:108:109- Raw architecture: HAMP:113:0.00000000000033:182:70:69#HisKA:207:0.000000000000822:271:65:64#HATPase_c:319:1.03e-23:425:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482095::NZ_QUMG01000017.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91099-93208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA93_13555RefSeq proteinWP_117801907.1
Context group ID
GCF_003482095::NZ_QUMG01000017.1::G00018Context members
DXA93_RS13560DXA93_RS13565
Partner locus tags
DXA93_RS13560DXA93_RS13565
Partner old locus tags
DXA93_13550DXA93_13555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117801907.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA93_RS13565Primary locus identifier stored in the genes table.
Old locus tagDXA93_13555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMG01000017.1Sequence record reported by the local genomic context database.
Genomic interval91 904-93 208 nt1 305 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 099-93 208 ntGCF_003482095::NZ_QUMG01000017.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482095::NZ_QUMG01000017.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMG01000017.1All displayed genes belong to this local TCS context.
Neighborhood span91 099-93 208 nt2 110 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 099 nt93 208 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA93_RS13560GCF_003482095#DXA93_RS13560
RROmpR
91 099-91 764 nt · Forward (+)
DXA93_RS13565GCF_003482095#DXA93_RS13565
HKClassicCurrent focus
91 904-93 208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460955#DWY63_RS08745Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2132683
Simplified PFAM architecture for HKOC_2132683
PFAM domain coverage: 224 / 434 aa (51.6%)
1 aa434 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[131-181] | HisKA[208-271] | HATPase_c[319-427]
- Domain count: 3
- Matched identifier: HKOC_2132683
- Positioned domains: HAMP 131-181 ; HisKA 208-271 ; HATPase_c 319-427
Cluster members and taxonomy
Representative gene: GCF_003460955#DWY63_RS08745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 981 · GCF_003482095
AssemblyASM348209v1 · Contighaploid
Genome composition3 679 129 bp · 47,0% GCBlautia sp. OF09-25XD
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key