1 Response_reg#1
4-117 aa · 114 aa · 25.4% of protein
Raw token
Response_reg:4:4.35e-33:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA93_RS10235
Response regulator, unclassified
Blautia sp. OF09-25XD · GCF_003482095
ClassRRTypeunclassifiedLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482095#DXA93_RS10235Stable P2CS identifier used across views.
GenomeGCF_003482095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 448 aa (25.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:4.35e-33:117:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482095::NZ_QUMG01000011.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17934-21059Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA93_10230RefSeq proteinWP_243109203.1
Context group ID
GCF_003482095::NZ_QUMG01000011.1::G00006Context members
DXA93_RS10230DXA93_RS10235
Partner locus tags
DXA93_RS10230DXA93_RS10235
Partner old locus tags
DXA93_10225DXA93_10230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243109203.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA93_RS10235Primary locus identifier stored in the genes table.
Old locus tagDXA93_10230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMG01000011.1Sequence record reported by the local genomic context database.
Genomic interval19 713-21 059 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 934-21 059 ntGCF_003482095::NZ_QUMG01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482095::NZ_QUMG01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMG01000011.1All displayed genes belong to this local TCS context.
Neighborhood span17 934-21 059 nt3 126 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 934 nt21 059 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA93_RS10230GCF_003482095#DXA93_RS10230
HKClassic
17 934-19 691 nt · Forward (+)
DXA93_RS10235GCF_003482095#DXA93_RS10235
RRunclassifiedCurrent focus
19 713-21 059 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482095#DXA93_RS10235The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0297844
Simplified PFAM architecture for RROC_0297844
PFAM domain coverage: 114 / 448 aa (25.4%)
1 aa448 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-117]
- Domain count: 1
- Matched identifier: RROC_0297844
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117
Cluster members and taxonomy
Representative gene: GCF_003482095#DXA93_RS10235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 981 · GCF_003482095
AssemblyASM348209v1 · Contighaploid
Genome composition3 679 129 bp · 47,0% GCBlautia sp. OF09-25XD
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key