1 Response_reg#1
4-112 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:4:2.95e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA93_RS02910
Response regulator OmpR family
Blautia sp. OF09-25XD · GCF_003482095
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482095#DXA93_RS02910Stable P2CS identifier used across views.
GenomeGCF_003482095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:4.69e-25:218:77:77- Raw architecture: Response_reg:4:2.95e-34:112:111:111#Trans_reg_C:144:4.69e-25:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482095::NZ_QUMG01000002.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span201677-202339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA93_02910RefSeq proteinWP_015512795.1
Context group ID
GCF_003482095::NZ_QUMG01000002.1::G00025Context members
DXA93_RS02910
Partner locus tags
DXA93_RS02910
Partner old locus tags
DXA93_02910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015512795.1Primary protein accession used for annex mappings.
UniProt accessionA0A413YQ46Primary UniProt accession resolved in the annex database.
UniProt IDA0A413YQ46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA93_RS02910Primary locus identifier stored in the genes table.
Old locus tagDXA93_02910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMG01000002.1Sequence record reported by the local genomic context database.
Genomic interval201 677-202 339 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span201 677-202 339 ntGCF_003482095::NZ_QUMG01000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482095::NZ_QUMG01000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMG01000002.1All displayed genes belong to this local TCS context.
Neighborhood span201 677-202 339 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 677 nt202 339 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA93_RS02910GCF_003482095#DXA93_RS02910
RROmpRCurrent focus
201 677-202 339 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS01120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1723301
Simplified PFAM architecture for RROC_1723301
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1723301
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS01120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 981 · GCF_003482095
AssemblyASM348209v1 · Contighaploid
Genome composition3 679 129 bp · 47,0% GCBlautia sp. OF09-25XD
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key