1 Response_reg#1
4-111 aa · 108 aa · 21.4% of protein
Raw token
Response_reg:4:7.42e-29:111:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA93_RS00475
Response regulator, unclassified
Blautia sp. OF09-25XD · GCF_003482095
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482095#DXA93_RS00475Stable P2CS identifier used across views.
GenomeGCF_003482095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage179 / 505 aa (35.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:408:0.00000000349:449:42:423 HTH_AraC#3
470-498 aa · 29 aa · 5.7% of protein
Raw token
HTH_AraC:470:0.000000471:498:29:42- Raw architecture: Response_reg:4:7.42e-29:111:108:111#HTH_AraC:408:0.00000000349:449:42:42#HTH_AraC:470:0.000000471:498:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482095::NZ_QUMG01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87114-90430Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA93_00475RefSeq proteinWP_119207617.1
Context group ID
GCF_003482095::NZ_QUMG01000001.1::G00002Context members
DXA93_RS00475DXA93_RS00480
Partner locus tags
DXA93_RS00475DXA93_RS00480
Partner old locus tags
DXA93_00475DXA93_00480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119207617.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA93_RS00475Primary locus identifier stored in the genes table.
Old locus tagDXA93_00475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMG01000001.1Sequence record reported by the local genomic context database.
Genomic interval87 114-88 631 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 114-90 430 ntGCF_003482095::NZ_QUMG01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482095::NZ_QUMG01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span87 114-90 430 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 114 nt90 430 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA93_RS00475GCF_003482095#DXA93_RS00475
RRunclassifiedCurrent focus
87 114-88 631 nt · Forward (+)
DXA93_RS00480GCF_003482095#DXA93_RS00480
HKClassic
88 628-90 430 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482095#DXA93_RS00475The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152602
Simplified PFAM architecture for RROC_0152602
PFAM domain coverage: 191 / 505 aa (37.8%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[422-500]
- Domain count: 2
- Matched identifier: RROC_0152602
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 422-500 ; HTH_18 422-500
Cluster members and taxonomy
Representative gene: GCF_003482095#DXA93_RS00475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 981 · GCF_003482095
AssemblyASM348209v1 · Contighaploid
Genome composition3 679 129 bp · 47,0% GCBlautia sp. OF09-25XD
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key