1 HAMP#1
177-246 aa · 70 aa · 14.7% of protein
Raw token
HAMP:177:0.00000000000000602:246:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28196_RS09610
Histidine kinase, Classic
Clostridioides difficile · GCF_003482035
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482035#CDIF28196_RS09610Stable P2CS identifier used across views.
GenomeGCF_003482035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 477 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
253-317 aa · 65 aa · 13.6% of protein
Raw token
HisKA:253:1.02e-16:317:65:643 HATPase_c#3
365-470 aa · 106 aa · 22.2% of protein
Raw token
HATPase_c:365:6.76e-28:470:107:109- Raw architecture: HAMP:177:0.00000000000000602:246:70:69#HisKA:253:1.02e-16:317:65:64#HATPase_c:365:6.76e-28:470:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482035::NZ_CP012320.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1980696-1982830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28196_01901RefSeq proteinWP_003430278.1
Context group ID
GCF_003482035::NZ_CP012320.1::G00030Context members
CDIF28196_RS09605CDIF28196_RS09610
Partner locus tags
CDIF28196_RS09605CDIF28196_RS09610
Partner old locus tags
CDIF28196_01900CDIF28196_01901
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003430278.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N3K5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N3K5_CLODCDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28196_RS09610Primary locus identifier stored in the genes table.
Old locus tagCDIF28196_01901Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012320.1Sequence record reported by the local genomic context database.
Genomic interval1 981 397-1 982 830 nt1 434 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 980 696-1 982 830 ntGCF_003482035::NZ_CP012320.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482035::NZ_CP012320.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012320.1All displayed genes belong to this local TCS context.
Neighborhood span1 980 696-1 982 830 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 980 696 nt1 982 830 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF28196_RS09605GCF_003482035#CDIF28196_RS09605
RROmpR
1 980 696-1 981 394 nt · Forward (+)
CDIF28196_RS09610GCF_003482035#CDIF28196_RS09610
HKClassicCurrent focus
1 981 397-1 982 830 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209215Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1645510
Simplified PFAM architecture for HKOC_1645510
PFAM domain coverage: 220 / 477 aa (46.1%)
1 aa477 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-246] | HisKA[253-316] | HATPase_c[365-470]
- Domain count: 3
- Matched identifier: HKOC_1645510
- Positioned domains: HAMP 197-246 ; HisKA 253-316 ; HATPase_c 365-470
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482035
AssemblyASM348203v1 · Complete Genomehaploid
Genome composition4 205 365 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key