1 HisKA#1
118-178 aa · 61 aa · 18.3% of protein
Raw token
HisKA:118:0.00000789:178:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28196_RS07925
Histidine kinase, Classic
Clostridioides difficile · GCF_003482035
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482035#CDIF28196_RS07925Stable P2CS identifier used across views.
GenomeGCF_003482035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 334 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
224-331 aa · 108 aa · 32.3% of protein
Raw token
HATPase_c:224:2.75e-25:331:108:109- Raw architecture: HisKA:118:0.00000789:178:63:64#HATPase_c:224:2.75e-25:331:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482035::NZ_CP012320.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1642066-1643768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28196_01557RefSeq proteinWP_009893102.1
Context group ID
GCF_003482035::NZ_CP012320.1::G00024Context members
CDIF28196_RS07925CDIF28196_RS07930
Partner locus tags
CDIF28196_RS07925CDIF28196_RS07930
Partner old locus tags
CDIF28196_01557CDIF28196_01558
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009893102.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N6P7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N6P7_CLODCDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28196_RS07925Primary locus identifier stored in the genes table.
Old locus tagCDIF28196_01557Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012320.1Sequence record reported by the local genomic context database.
Genomic interval1 642 066-1 643 070 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 642 066-1 643 768 ntGCF_003482035::NZ_CP012320.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482035::NZ_CP012320.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012320.1All displayed genes belong to this local TCS context.
Neighborhood span1 642 066-1 643 768 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 642 066 nt1 643 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF28196_RS07925GCF_003482035#CDIF28196_RS07925
HKClassicCurrent focus
1 642 066-1 643 070 nt · Reverse (-)
CDIF28196_RS07930GCF_003482035#CDIF28196_RS07930
RROmpR
1 643 094-1 643 768 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0207545Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849742
Simplified PFAM architecture for HKOC_2849742
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2849742
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0207545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482035
AssemblyASM348203v1 · Complete Genomehaploid
Genome composition4 205 365 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key