1 HisKA#1
241-305 aa · 65 aa · 14.1% of protein
Raw token
HisKA:241:0.00000000000123:305:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28196_RS06960
Histidine kinase, Classic
Clostridioides difficile · GCF_003482035
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482035#CDIF28196_RS06960Stable P2CS identifier used across views.
GenomeGCF_003482035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 462 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
352-460 aa · 109 aa · 23.6% of protein
Raw token
HATPase_c:352:3.94e-21:460:109:109- Raw architecture: HisKA:241:0.00000000000123:305:65:64#HATPase_c:352:3.94e-21:460:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482035::NZ_CP012320.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1436126-1437514Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28196_01365RefSeq proteinWP_011861185.1
Context group ID
GCF_003482035::NZ_CP012320.1::G00021Context members
CDIF28196_RS06960
Partner locus tags
CDIF28196_RS06960
Partner old locus tags
CDIF28196_01365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011861185.1Primary protein accession used for annex mappings.
UniProt accessionQ18BL5Primary UniProt accession resolved in the annex database.
UniProt IDQ18BL5_CLOD6Display identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28196_RS06960Primary locus identifier stored in the genes table.
Old locus tagCDIF28196_01365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012320.1Sequence record reported by the local genomic context database.
Genomic interval1 436 126-1 437 514 nt1 389 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 436 126-1 437 514 ntGCF_003482035::NZ_CP012320.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482035::NZ_CP012320.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012320.1All displayed genes belong to this local TCS context.
Neighborhood span1 436 126-1 437 514 nt1 389 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 436 126 nt1 437 514 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF28196_RS06960GCF_003482035#CDIF28196_RS06960
HKClassicCurrent focus
1 436 126-1 437 514 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS07470Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1807357
Simplified PFAM architecture for HKOC_1807357
PFAM domain coverage: 174 / 462 aa (37.7%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[241-305] | HATPase_c[352-460]
- Domain count: 2
- Matched identifier: HKOC_1807357
- Positioned domains: HisKA 241-305 ; HATPase_c 352-460
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS07470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482035
AssemblyASM348203v1 · Complete Genomehaploid
Genome composition4 205 365 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key