1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:1.93e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28196_RS02890
Response regulator OmpR family
Clostridioides difficile · GCF_003482035
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482035#CDIF28196_RS02890Stable P2CS identifier used across views.
GenomeGCF_003482035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 215 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
139-210 aa · 72 aa · 33.5% of protein
Raw token
Trans_reg_C:139:2.68e-28:210:77:77- Raw architecture: Response_reg:3:1.93e-33:112:111:111#Trans_reg_C:139:2.68e-28:210:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482035::NZ_CP012320.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span536655-538689Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28196_00581RefSeq proteinWP_009888321.1
Context group ID
GCF_003482035::NZ_CP012320.1::G00007Context members
CDIF28196_RS02890CDIF28196_RS02895
Partner locus tags
CDIF28196_RS02890CDIF28196_RS02895
Partner old locus tags
CDIF28196_00581CDIF28196_00582
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009888321.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N022Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N022_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28196_RS02890Primary locus identifier stored in the genes table.
Old locus tagCDIF28196_00581Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012320.1Sequence record reported by the local genomic context database.
Genomic interval536 655-537 302 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span536 655-538 689 ntGCF_003482035::NZ_CP012320.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482035::NZ_CP012320.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012320.1All displayed genes belong to this local TCS context.
Neighborhood span536 655-538 689 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
536 655 nt538 689 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF28196_RS02890GCF_003482035#CDIF28196_RS02890
RROmpRCurrent focus
536 655-537 302 nt · Forward (+)
CDIF28196_RS02895GCF_003482035#CDIF28196_RS02895
HKClassic
537 295-538 689 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906480
Simplified PFAM architecture for RROC_1906480
PFAM domain coverage: 179 / 215 aa (83.3%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1906480
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482035
AssemblyASM348203v1 · Complete Genomehaploid
Genome composition4 205 365 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key