1 HisKA#1
122-175 aa · 54 aa · 16.1% of protein
Raw token
HisKA:122:0.00000326:175:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29688_RS16235
Histidine kinase, Classic
Clostridioides difficile · GCF_003481905
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481905#CDIF29688_RS16235Stable P2CS identifier used across views.
GenomeGCF_003481905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 335 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-331 aa · 111 aa · 33.1% of protein
Raw token
HATPase_c:221:1.93e-20:331:111:109- Raw architecture: HisKA:122:0.00000326:175:60:64#HATPase_c:221:1.93e-20:331:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481905::NZ_CP019858.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3367544-3369219Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29688_03214RefSeq proteinWP_021367076.1
Context group ID
GCF_003481905::NZ_CP019858.1::G00048Context members
CDIF29688_RS16235CDIF29688_RS16240
Partner locus tags
CDIF29688_RS16235CDIF29688_RS16240
Partner old locus tags
CDIF29688_03214CDIF29688_03215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021367076.1Primary protein accession used for annex mappings.
UniProt accessionA0A069AJD6Primary UniProt accession resolved in the annex database.
UniProt IDA0A069AJD6_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29688_RS16235Primary locus identifier stored in the genes table.
Old locus tagCDIF29688_03214Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP019858.1Sequence record reported by the local genomic context database.
Genomic interval3 367 544-3 368 551 nt1 008 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 367 544-3 369 219 ntGCF_003481905::NZ_CP019858.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481905::NZ_CP019858.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP019858.1All displayed genes belong to this local TCS context.
Neighborhood span3 367 544-3 369 219 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 367 544 nt3 369 219 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF29688_RS16235GCF_003481905#CDIF29688_RS16235
HKClassicCurrent focus
3 367 544-3 368 551 nt · Reverse (-)
CDIF29688_RS16240GCF_003481905#CDIF29688_RS16240
RROmpR
3 368 548-3 369 219 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS14880Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2848218
Simplified PFAM architecture for HKOC_2848218
PFAM domain coverage: 110 / 335 aa (32.8%)
1 aa335 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-330]
- Domain count: 1
- Matched identifier: HKOC_2848218
- Positioned domains: HATPase_c 221-330
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS14880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003481905
AssemblyASM348190v1 · Complete Genomehaploid
Genome composition4 228 964 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key