1 Response_reg#1
4-115 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:4:2.75e-36:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB71_RS17775
Response regulator OmpR family
Blautia sp. OM05-6 · GCF_003481455
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481455#DXB71_RS17775Stable P2CS identifier used across views.
GenomeGCF_003481455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:155:8.5e-35:229:75:77- Raw architecture: Response_reg:4:2.75e-36:115:113:111#Trans_reg_C:155:8.5e-35:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481455::NZ_QULI01000026.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3393-5020Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB71_17780RefSeq proteinWP_117522866.1
Context group ID
GCF_003481455::NZ_QULI01000026.1::G00033Context members
DXB71_RS17775DXB71_RS17780
Partner locus tags
DXB71_RS17775DXB71_RS17780
Partner old locus tags
DXB71_17780DXB71_17785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117522866.1Primary protein accession used for annex mappings.
UniProt accessionA0A412EXG4Primary UniProt accession resolved in the annex database.
UniProt IDA0A412EXG4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB71_RS17775Primary locus identifier stored in the genes table.
Old locus tagDXB71_17780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULI01000026.1Sequence record reported by the local genomic context database.
Genomic interval3 393-4 094 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 393-5 020 ntGCF_003481455::NZ_QULI01000026.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481455::NZ_QULI01000026.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULI01000026.1All displayed genes belong to this local TCS context.
Neighborhood span3 393-5 020 nt1 628 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 393 nt5 020 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB71_RS17775GCF_003481455#DXB71_RS17775
RROmpRCurrent focus
3 393-4 094 nt · Forward (+)
DXB71_RS17780GCF_003481455#DXB71_RS17780
HKClassic
4 097-5 020 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS18575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1090436
Simplified PFAM architecture for RROC_1090436
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1090436
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS18575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 983 · GCF_003481455
AssemblyASM348145v1 · Scaffoldhaploid
Genome composition4 162 967 bp · 46,5% GCBlautia sp. OM05-6
Signal transduction countsGenes 108 · HK 53 · RR 52CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key