1 Response_reg#1
7-123 aa · 117 aa · 84.8% of protein
Raw token
Response_reg:7:5.63e-28:123:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB71_RS13320
Response regulator, CheY family
Blautia sp. OM05-6 · GCF_003481455
ClassRRTypeCheYLength138 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481455#DXB71_RS13320Stable P2CS identifier used across views.
GenomeGCF_003481455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length138 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 138 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa138 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:5.63e-28:123:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481455::NZ_QULI01000013.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101977-104171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB71_13330RefSeq proteinWP_147397731.1
Context group ID
GCF_003481455::NZ_QULI01000013.1::G00018Context members
DXB71_RS13320DXB71_RS13325
Partner locus tags
DXB71_RS13320DXB71_RS13325
Partner old locus tags
DXB71_13330DXB71_13335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147397731.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB71_RS13320Primary locus identifier stored in the genes table.
Old locus tagDXB71_13330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULI01000013.1Sequence record reported by the local genomic context database.
Genomic interval101 977-102 393 nt417 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 977-104 171 ntGCF_003481455::NZ_QULI01000013.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481455::NZ_QULI01000013.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULI01000013.1All displayed genes belong to this local TCS context.
Neighborhood span101 977-104 171 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 977 nt104 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB71_RS13320GCF_003481455#DXB71_RS13320
RRCheYCurrent focus
101 977-102 393 nt · Reverse (-)
DXB71_RS13325GCF_003481455#DXB71_RS13325
HKClassic
102 507-104 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS07240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2274595
Simplified PFAM architecture for RROC_2274595
PFAM domain coverage: 116 / 138 aa (84.1%)
1 aa138 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-122]
- Domain count: 1
- Matched identifier: RROC_2274595
- Positioned domains: Response_reg 7-122 ; Response_reg 7-122
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS07240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 983 · GCF_003481455
AssemblyASM348145v1 · Scaffoldhaploid
Genome composition4 162 967 bp · 46,5% GCBlautia sp. OM05-6
Signal transduction countsGenes 108 · HK 53 · RR 52CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key