1 Response_reg#1
4-119 aa · 116 aa · 48.5% of protein
Raw token
Response_reg:4:0.0000000000000669:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB71_RS08840
Response regulator LytTR family
Blautia sp. OM05-6 · GCF_003481455
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481455#DXB71_RS08840Stable P2CS identifier used across views.
GenomeGCF_003481455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 239 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-232 aa · 93 aa · 38.9% of protein
Raw token
LytTR:140:0.0000000000108:232:98:98- Raw architecture: Response_reg:4:0.0000000000000669:119:118:111#LytTR:140:0.0000000000108:232:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481455::NZ_QULI01000007.1::G00060
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span98849-99568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB71_08845RefSeq proteinWP_117689853.1
Context group ID
GCF_003481455::NZ_QULI01000007.1::G00060Context members
DXB71_RS08840
Partner locus tags
DXB71_RS08840
Partner old locus tags
DXB71_08845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117689853.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5ANY9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5ANY9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB71_RS08840Primary locus identifier stored in the genes table.
Old locus tagDXB71_08845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULI01000007.1Sequence record reported by the local genomic context database.
Genomic interval98 849-99 568 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span98 849-99 568 ntGCF_003481455::NZ_QULI01000007.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481455::NZ_QULI01000007.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULI01000007.1All displayed genes belong to this local TCS context.
Neighborhood span98 849-99 568 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 849 nt99 568 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB71_RS08840GCF_003481455#DXB71_RS08840
RRLytTRCurrent focus
98 849-99 568 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438365#DXB72_RS06985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0912980
Simplified PFAM architecture for RROC_0912980
PFAM domain coverage: 207 / 239 aa (86.6%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[140-231]
- Domain count: 2
- Matched identifier: RROC_0912980
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; LytTR 140-231 ; LytTR 140-231
Cluster members and taxonomy
Representative gene: GCF_003438365#DXB72_RS06985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 983 · GCF_003481455
AssemblyASM348145v1 · Scaffoldhaploid
Genome composition4 162 967 bp · 46,5% GCBlautia sp. OM05-6
Signal transduction countsGenes 108 · HK 53 · RR 52CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key