1 HAMP#1
274-343 aa · 70 aa · 12.5% of protein
Raw token
HAMP:274:0.00000000000000425:343:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB71_RS07695
Histidine kinase, Classic
Blautia sp. OM05-6 · GCF_003481455
ClassHKTypeClassicLength562 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481455#DXB71_RS07695Stable P2CS identifier used across views.
GenomeGCF_003481455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length562 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 562 aa (44.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa562 aa
Domain-by-domain annotation3 items
2 His_kinase#2
359-431 aa · 73 aa · 13.0% of protein
Raw token
His_kinase:359:3.7e-29:431:73:803 HATPase_c#3
449-554 aa · 106 aa · 18.9% of protein
Raw token
HATPase_c:449:0.00000000000000411:554:115:109- Raw architecture: HAMP:274:0.00000000000000425:343:70:69#His_kinase:359:3.7e-29:431:73:80#HATPase_c:449:0.00000000000000411:554:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481455::NZ_QULI01000006.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75410-78665Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB71_07700RefSeq proteinWP_158585767.1
Context group ID
GCF_003481455::NZ_QULI01000006.1::G00054Context members
DXB71_RS07695DXB71_RS20590
Partner locus tags
DXB71_RS07695DXB71_RS20590
Partner old locus tags
DXB71_07700DXB71_07705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158585767.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB71_RS07695Primary locus identifier stored in the genes table.
Old locus tagDXB71_07700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULI01000006.1Sequence record reported by the local genomic context database.
Genomic interval75 410-77 098 nt1 689 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 410-78 665 ntGCF_003481455::NZ_QULI01000006.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481455::NZ_QULI01000006.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span75 410-78 665 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 410 nt78 665 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB71_RS07695GCF_003481455#DXB71_RS07695
HKClassicCurrent focus
75 410-77 098 nt · Reverse (-)
DXB71_RS20590GCF_003481455#DXB71_RS20590
RRunclassified
77 142-78 665 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS11465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184921
Simplified PFAM architecture for HKOC_1184921
PFAM domain coverage: 231 / 576 aa (40.1%)
1 aa576 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[306-357] | His_kinase[373-445] | HATPase_c[463-568]
- Domain count: 3
- Matched identifier: HKOC_1184921
- Positioned domains: HAMP 306-357 ; His_kinase 373-445 ; HATPase_c 463-568
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS11465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 983 · GCF_003481455
AssemblyASM348145v1 · Scaffoldhaploid
Genome composition4 162 967 bp · 46,5% GCBlautia sp. OM05-6
Signal transduction countsGenes 108 · HK 53 · RR 52CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key