1 Response_reg#1
12-102 aa · 91 aa · 42.3% of protein
Raw token
Response_reg:12:8.22e-35:102:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB71_RS06530
Response regulator OmpR family
Blautia sp. OM05-6 · GCF_003481455
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481455#DXB71_RS06530Stable P2CS identifier used across views.
GenomeGCF_003481455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 215 aa (77.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
134-209 aa · 76 aa · 35.3% of protein
Raw token
Trans_reg_C:134:4.09e-22:209:78:77- Raw architecture: Response_reg:12:8.22e-35:102:91:111#Trans_reg_C:134:4.09e-22:209:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481455::NZ_QULI01000005.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38944-40760Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB71_06535RefSeq proteinWP_243113207.1
Context group ID
GCF_003481455::NZ_QULI01000005.1::G00050Context members
DXB71_RS06525DXB71_RS06530
Partner locus tags
DXB71_RS06525DXB71_RS06530
Partner old locus tags
DXB71_06530DXB71_06535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243113207.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB71_RS06530Primary locus identifier stored in the genes table.
Old locus tagDXB71_06535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULI01000005.1Sequence record reported by the local genomic context database.
Genomic interval40 113-40 760 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 944-40 760 ntGCF_003481455::NZ_QULI01000005.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481455::NZ_QULI01000005.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span38 944-40 760 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 944 nt40 760 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB71_RS06525GCF_003481455#DXB71_RS06525
HKClassic
38 944-40 116 nt · Reverse (-)
DXB71_RS06530GCF_003481455#DXB71_RS06530
RROmpRCurrent focus
40 113-40 760 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481455#DXB71_RS06530The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1913345
Simplified PFAM architecture for RROC_1913345
PFAM domain coverage: 173 / 215 aa (80.5%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-102] | Trans_reg_C[135-208]
- Domain count: 2
- Matched identifier: RROC_1913345
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102 ; Trans_reg_C 135-208 ; Trans_reg_C 135-208
Cluster members and taxonomy
Representative gene: GCF_003481455#DXB71_RS06530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 983 · GCF_003481455
AssemblyASM348145v1 · Scaffoldhaploid
Genome composition4 162 967 bp · 46,5% GCBlautia sp. OM05-6
Signal transduction countsGenes 108 · HK 53 · RR 52CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key