1 Response_reg#1
3-75 aa · 73 aa · 84.9% of protein
Raw token
Response_reg:3:7.41e-19:75:73:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB83_RS14795
Response regulator, CheY family
Blautia sp. OM06-15AC · GCF_003481425
ClassRRTypeCheYLength86 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003481425#DXB83_RS14795Stable P2CS identifier used across views.
GenomeGCF_003481425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
External referencesMIST4 DXB83_RS14795MIST4
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length86 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage73 / 86 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa86 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:7.41e-19:75:73:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003481425::NZ_QULD01000014.1::G00012
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span80973-86604Genomic interval covered by the local TCS group.
Context group ID
GCF_003481425::NZ_QULD01000014.1::G00012Context members
DXB83_RS14780DXB83_RS14790DXB83_RS14795
Partner locus tags
DXB83_RS14780DXB83_RS14790DXB83_RS14795
Partner old locus tags
DXB83_14795DXB83_14805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB83_RS14795Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QULD01000014.1Sequence record reported by the local genomic context database.
Genomic interval86 317-86 604 nt288 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 973-86 604 ntGCF_003481425::NZ_QULD01000014.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481425::NZ_QULD01000014.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULD01000014.1All displayed genes belong to this local TCS context.
Neighborhood span80 973-86 604 nt5 632 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 973 nt86 604 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXB83_RS14780GCF_003481425#DXB83_RS14780
HKHybrid
80 973-82 895 nt · Reverse (-)
DXB83_RS14790GCF_003481425#DXB83_RS14790
HKHybrid
83 258-86 131 nt · Reverse (-)
DXB83_RS14795GCF_003481425#DXB83_RS14795
RRCheYCurrent focus
86 317-86 604 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481425#DXB83_RS14795The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2474901
Simplified PFAM architecture for RROC_2474901
PFAM domain coverage: 73 / 86 aa (84.9%)
1 aa86 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-75]
- Domain count: 1
- Matched identifier: RROC_2474901
- Positioned domains: Response_reg 3-75 ; Response_reg 3-75
Cluster members and taxonomy
Representative gene: GCF_003481425#DXB83_RS14795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 984 · GCF_003481425
AssemblyASM348142v1 · Scaffoldhaploid
Genome composition3 492 076 bp · 47,0% GCBlautia sp. OM06-15AC
Signal transduction countsGenes 92 · HK 49 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key