1 Response_reg#1
4-116 aa · 113 aa · 46.3% of protein
Raw token
Response_reg:4:2.02e-24:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB83_RS08740
Response regulator, unclassified
Blautia sp. OM06-15AC · GCF_003481425
ClassRRTypeunclassifiedLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481425#DXB83_RS08740Stable P2CS identifier used across views.
GenomeGCF_003481425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 244 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
148-189 aa · 42 aa · 17.2% of protein
Raw token
HTH_AraC:148:0.0000699:189:42:423 HTH_AraC#3
203-238 aa · 36 aa · 14.8% of protein
Raw token
HTH_AraC:203:0.000000435:238:36:42- Raw architecture: Response_reg:4:2.02e-24:116:113:111#HTH_AraC:148:0.0000699:189:42:42#HTH_AraC:203:0.000000435:238:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481425::NZ_QULD01000005.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135450-137853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB83_08755RefSeq proteinWP_055218660.1
Context group ID
GCF_003481425::NZ_QULD01000005.1::G00040Context members
DXB83_RS08735DXB83_RS08740
Partner locus tags
DXB83_RS08735DXB83_RS08740
Partner old locus tags
DXB83_08750DXB83_08755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055218660.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CZC9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CZC9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB83_RS08740Primary locus identifier stored in the genes table.
Old locus tagDXB83_08755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULD01000005.1Sequence record reported by the local genomic context database.
Genomic interval137 119-137 853 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 450-137 853 ntGCF_003481425::NZ_QULD01000005.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481425::NZ_QULD01000005.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULD01000005.1All displayed genes belong to this local TCS context.
Neighborhood span135 450-137 853 nt2 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 450 nt137 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB83_RS08735GCF_003481425#DXB83_RS08735
HKClassic
135 450-137 102 nt · Forward (+)
DXB83_RS08740GCF_003481425#DXB83_RS08740
RRunclassifiedCurrent focus
137 119-137 853 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS06955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0808030
Simplified PFAM architecture for RROC_0808030
PFAM domain coverage: 187 / 244 aa (76.6%)
1 aa244 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[165-239]
- Domain count: 2
- Matched identifier: RROC_0808030
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 165-239 ; HTH_18 165-239
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS06955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 984 · GCF_003481425
AssemblyASM348142v1 · Scaffoldhaploid
Genome composition3 492 076 bp · 47,0% GCBlautia sp. OM06-15AC
Signal transduction countsGenes 92 · HK 49 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key