1 HAMP#1
288-357 aa · 70 aa · 12.2% of protein
Raw token
HAMP:288:0.00000000000013:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB83_RS07680
Histidine kinase, Classic
Blautia sp. OM06-15AC · GCF_003481425
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481425#DXB83_RS07680Stable P2CS identifier used across views.
GenomeGCF_003481425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 576 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
373-445 aa · 73 aa · 12.7% of protein
Raw token
His_kinase:373:3.91e-29:445:73:803 HATPase_c#3
463-568 aa · 106 aa · 18.4% of protein
Raw token
HATPase_c:463:0.00000000000000447:568:115:109- Raw architecture: HAMP:288:0.00000000000013:357:70:69#His_kinase:373:3.91e-29:445:73:80#HATPase_c:463:0.00000000000000447:568:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481425::NZ_QULD01000004.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139019-142274Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB83_07695RefSeq proteinWP_158581094.1
Context group ID
GCF_003481425::NZ_QULD01000004.1::G00034Context members
DXB83_RS07680DXB83_RS17015
Partner locus tags
DXB83_RS07680DXB83_RS17015
Partner old locus tags
DXB83_07695DXB83_07700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158581094.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB83_RS07680Primary locus identifier stored in the genes table.
Old locus tagDXB83_07695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULD01000004.1Sequence record reported by the local genomic context database.
Genomic interval139 019-140 749 nt1 731 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span139 019-142 274 ntGCF_003481425::NZ_QULD01000004.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481425::NZ_QULD01000004.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span139 019-142 274 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 019 nt142 274 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB83_RS07680GCF_003481425#DXB83_RS07680
HKClassicCurrent focus
139 019-140 749 nt · Reverse (-)
DXB83_RS17015GCF_003481425#DXB83_RS17015
RRunclassified
140 751-142 274 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481425#DXB83_RS07680The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184265
Simplified PFAM architecture for HKOC_1184265
PFAM domain coverage: 230 / 576 aa (39.9%)
1 aa576 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[307-357] | His_kinase[373-445] | HATPase_c[463-568]
- Domain count: 3
- Matched identifier: HKOC_1184265
- Positioned domains: HAMP 307-357 ; His_kinase 373-445 ; HATPase_c 463-568
Cluster members and taxonomy
Representative gene: GCF_003481425#DXB83_RS07680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 984 · GCF_003481425
AssemblyASM348142v1 · Scaffoldhaploid
Genome composition3 492 076 bp · 47,0% GCBlautia sp. OM06-15AC
Signal transduction countsGenes 92 · HK 49 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key