1 Response_reg#1
6-114 aa · 109 aa · 20.5% of protein
Raw token
Response_reg:6:4.5e-26:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB83_RS07425
Response regulator, unclassified
Blautia sp. OM06-15AC · GCF_003481425
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481425#DXB83_RS07425Stable P2CS identifier used across views.
GenomeGCF_003481425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage172 / 532 aa (32.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
446-479 aa · 34 aa · 6.4% of protein
Raw token
HTH_AraC:446:0.00000000612:479:34:423 HTH_AraC#3
500-528 aa · 29 aa · 5.5% of protein
Raw token
HTH_AraC:500:0.000000386:528:29:42- Raw architecture: Response_reg:6:4.5e-26:114:109:111#HTH_AraC:446:0.00000000612:479:34:42#HTH_AraC:500:0.000000386:528:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481425::NZ_QULD01000004.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85859-89379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB83_07440RefSeq proteinWP_118697395.1
Context group ID
GCF_003481425::NZ_QULD01000004.1::G00032Context members
DXB83_RS07420DXB83_RS07425
Partner locus tags
DXB83_RS07420DXB83_RS07425
Partner old locus tags
DXB83_07435DXB83_07440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118697395.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB83_RS07425Primary locus identifier stored in the genes table.
Old locus tagDXB83_07440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULD01000004.1Sequence record reported by the local genomic context database.
Genomic interval87 781-89 379 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span85 859-89 379 ntGCF_003481425::NZ_QULD01000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481425::NZ_QULD01000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span85 859-89 379 nt3 521 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 859 nt89 379 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB83_RS07420GCF_003481425#DXB83_RS07420
HKClassic
85 859-87 694 nt · Reverse (-)
DXB83_RS07425GCF_003481425#DXB83_RS07425
RRunclassifiedCurrent focus
87 781-89 379 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481425#DXB83_RS07425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108290
Simplified PFAM architecture for RROC_0108290
PFAM domain coverage: 316 / 532 aa (59.4%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-117] | GGDEF_2[166-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0108290
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GGDEF_2 166-291 ; GGDEF_2 166-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_003481425#DXB83_RS07425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 984 · GCF_003481425
AssemblyASM348142v1 · Scaffoldhaploid
Genome composition3 492 076 bp · 47,0% GCBlautia sp. OM06-15AC
Signal transduction countsGenes 92 · HK 49 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key