1 CHASE#1
98-210 aa · 113 aa · 16.0% of protein
Raw token
CHASE:98:0.0000000571:210:131:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB83_RS06595
Histidine kinase, Hybrid
Blautia sp. OM06-15AC · GCF_003481425
ClassHKTypeHybridLength707 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481425#DXB83_RS06595Stable P2CS identifier used across views.
GenomeGCF_003481425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length707 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage416 / 707 aa (58.8%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa707 aa
Domain-by-domain annotation4 items
2 HisKA#2
319-385 aa · 67 aa · 9.5% of protein
Raw token
HisKA:319:2.17e-16:385:67:643 HATPase_c#3
431-549 aa · 119 aa · 16.8% of protein
Raw token
HATPase_c:431:1.11e-28:549:119:1094 Response_reg#4
577-693 aa · 117 aa · 16.5% of protein
Raw token
Response_reg:577:1.75e-27:693:117:111- Raw architecture: CHASE:98:0.0000000571:210:131:183#HisKA:319:2.17e-16:385:67:64#HATPase_c:431:1.11e-28:549:119:109#Response_reg:577:1.75e-27:693:117:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481425::NZ_QULD01000003.1::G00026
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span281566-286650Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB83_06610RefSeq proteinWP_118697368.1
Context group ID
GCF_003481425::NZ_QULD01000003.1::G00026Context members
DXB83_RS06590DXB83_RS06595
Partner locus tags
DXB83_RS06590DXB83_RS06595
Partner old locus tags
DXB83_06605DXB83_06610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118697368.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB83_RS06595Primary locus identifier stored in the genes table.
Old locus tagDXB83_06610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULD01000003.1Sequence record reported by the local genomic context database.
Genomic interval284 527-286 650 nt2 124 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span281 566-286 650 ntGCF_003481425::NZ_QULD01000003.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481425::NZ_QULD01000003.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span281 566-286 650 nt5 085 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
281 566 nt286 650 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB83_RS06590GCF_003481425#DXB83_RS06590
HKHybrid
281 566-284 397 nt · Reverse (-)
DXB83_RS06595GCF_003481425#DXB83_RS06595
HKHybridCurrent focus
284 527-286 650 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481425#DXB83_RS06595The current gene is the representative for this cluster.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0756382
Simplified PFAM architecture for HKOC_0756382
PFAM domain coverage: 402 / 707 aa (56.9%)
1 aa707 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[102-204] | HisKA[320-385] | HATPase_c[431-547] | Response_reg[577-692]
- Domain count: 4
- Matched identifier: HKOC_0756382
- Positioned domains: CHASE 102-204 ; HisKA 320-385 ; HATPase_c 431-547 ; Response_reg 577-692
Cluster members and taxonomy
Representative gene: GCF_003481425#DXB83_RS06595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 984 · GCF_003481425
AssemblyASM348142v1 · Scaffoldhaploid
Genome composition3 492 076 bp · 47,0% GCBlautia sp. OM06-15AC
Signal transduction countsGenes 92 · HK 49 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key