1 HAMP#1
277-349 aa · 73 aa · 12.6% of protein
Raw token
HAMP:277:0.0000229:349:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB83_RS04745
Histidine kinase, Classic
Blautia sp. OM06-15AC · GCF_003481425
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481425#DXB83_RS04745Stable P2CS identifier used across views.
GenomeGCF_003481425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 580 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-443 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:365:8.17e-21:443:79:803 HATPase_c#3
461-566 aa · 106 aa · 18.3% of protein
Raw token
HATPase_c:461:0.0000000229:566:113:109- Raw architecture: HAMP:277:0.0000229:349:73:69#His_kinase:365:8.17e-21:443:79:80#HATPase_c:461:0.0000000229:566:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481425::NZ_QULD01000002.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247287-250602Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB83_04760RefSeq proteinWP_118697343.1
Context group ID
GCF_003481425::NZ_QULD01000002.1::G00022Context members
DXB83_RS04745DXB83_RS04750
Partner locus tags
DXB83_RS04745DXB83_RS04750
Partner old locus tags
DXB83_04760DXB83_04765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118697343.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB83_RS04745Primary locus identifier stored in the genes table.
Old locus tagDXB83_04760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULD01000002.1Sequence record reported by the local genomic context database.
Genomic interval247 287-249 029 nt1 743 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span247 287-250 602 ntGCF_003481425::NZ_QULD01000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481425::NZ_QULD01000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULD01000002.1All displayed genes belong to this local TCS context.
Neighborhood span247 287-250 602 nt3 316 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 287 nt250 602 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB83_RS04745GCF_003481425#DXB83_RS04745
HKClassicCurrent focus
247 287-249 029 nt · Forward (+)
DXB83_RS04750GCF_003481425#DXB83_RS04750
RRunclassified
249 007-250 602 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481425#DXB83_RS04745The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1163168
Simplified PFAM architecture for HKOC_1163168
PFAM domain coverage: 186 / 580 aa (32.1%)
1 aa580 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[365-443] | HATPase_c[462-568]
- Domain count: 2
- Matched identifier: HKOC_1163168
- Positioned domains: His_kinase 365-443 ; HATPase_c 462-568
Cluster members and taxonomy
Representative gene: GCF_003481425#DXB83_RS04745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 984 · GCF_003481425
AssemblyASM348142v1 · Scaffoldhaploid
Genome composition3 492 076 bp · 47,0% GCBlautia sp. OM06-15AC
Signal transduction countsGenes 92 · HK 49 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key