1 HAMP#1
211-279 aa · 69 aa · 13.0% of protein
Raw token
HAMP:211:5.5e-19:279:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB83_RS01835
Histidine kinase, Classic
Blautia sp. OM06-15AC · GCF_003481425
ClassHKTypeClassicLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481425#DXB83_RS01835Stable P2CS identifier used across views.
GenomeGCF_003481425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 532 aa (46.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HisKA#2
304-371 aa · 68 aa · 12.8% of protein
Raw token
HisKA:304:0.00000000000000253:371:68:643 HATPase_c#3
416-523 aa · 108 aa · 20.3% of protein
Raw token
HATPase_c:416:2.23e-16:523:109:109- Raw architecture: HAMP:211:5.5e-19:279:69:69#HisKA:304:0.00000000000000253:371:68:64#HATPase_c:416:2.23e-16:523:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481425::NZ_QULD01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span357196-359474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB83_01850RefSeq proteinWP_243038320.1
Context group ID
GCF_003481425::NZ_QULD01000001.1::G00004Context members
DXB83_RS01830DXB83_RS01835
Partner locus tags
DXB83_RS01830DXB83_RS01835
Partner old locus tags
DXB83_01845DXB83_01850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243038320.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB83_RS01835Primary locus identifier stored in the genes table.
Old locus tagDXB83_01850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULD01000001.1Sequence record reported by the local genomic context database.
Genomic interval357 876-359 474 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span357 196-359 474 ntGCF_003481425::NZ_QULD01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481425::NZ_QULD01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span357 196-359 474 nt2 279 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
357 196 nt359 474 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB83_RS01830GCF_003481425#DXB83_RS01830
RROmpR
357 196-357 879 nt · Forward (+)
DXB83_RS01835GCF_003481425#DXB83_RS01835
HKClassicCurrent focus
357 876-359 474 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS12525Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1349229
Simplified PFAM architecture for HKOC_1349229
PFAM domain coverage: 228 / 532 aa (42.9%)
1 aa532 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[228-279] | HisKA[304-369] | HATPase_c[416-525]
- Domain count: 3
- Matched identifier: HKOC_1349229
- Positioned domains: HAMP 228-279 ; HisKA 304-369 ; HATPase_c 416-525
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS12525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 984 · GCF_003481425
AssemblyASM348142v1 · Scaffoldhaploid
Genome composition3 492 076 bp · 47,0% GCBlautia sp. OM06-15AC
Signal transduction countsGenes 92 · HK 49 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key