1 HAMP#1
64-132 aa · 69 aa · 18.3% of protein
Raw token
HAMP:64:0.0000000000016:132:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD02_RS09485
Histidine kinase, Classic
Blautia sp. TF10-30 · GCF_003481245
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481245#DXD02_RS09485Stable P2CS identifier used across views.
GenomeGCF_003481245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 377 aa (65.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation3 items
2 HisKA#2
144-209 aa · 66 aa · 17.5% of protein
Raw token
HisKA:144:0.00000000000131:209:66:643 HATPase_c#3
256-365 aa · 110 aa · 29.2% of protein
Raw token
HATPase_c:256:1.67e-28:365:111:109- Raw architecture: HAMP:64:0.0000000000016:132:69:69#HisKA:144:0.00000000000131:209:66:64#HATPase_c:256:1.67e-28:365:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481245::NZ_QUKM01000009.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4976-6797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD02_09500RefSeq proteinWP_055228565.1
Context group ID
GCF_003481245::NZ_QUKM01000009.1::G00046Context members
DXD02_RS09480DXD02_RS09485
Partner locus tags
DXD02_RS09480DXD02_RS09485
Partner old locus tags
DXD02_09495DXD02_09500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055228565.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD02_RS09485Primary locus identifier stored in the genes table.
Old locus tagDXD02_09500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKM01000009.1Sequence record reported by the local genomic context database.
Genomic interval5 664-6 797 nt1 134 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 976-6 797 ntGCF_003481245::NZ_QUKM01000009.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481245::NZ_QUKM01000009.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKM01000009.1All displayed genes belong to this local TCS context.
Neighborhood span4 976-6 797 nt1 822 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 976 nt6 797 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD02_RS09480GCF_003481245#DXD02_RS09480
RROmpR
4 976-5 674 nt · Forward (+)
DXD02_RS09485GCF_003481245#DXD02_RS09485
HKClassicCurrent focus
5 664-6 797 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS15140Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2634766
Simplified PFAM architecture for HKOC_2634766
PFAM domain coverage: 227 / 377 aa (60.2%)
1 aa377 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[80-131] | HisKA[144-209] | HATPase_c[257-365]
- Domain count: 3
- Matched identifier: HKOC_2634766
- Positioned domains: HAMP 80-131 ; HisKA 144-209 ; HATPase_c 257-365
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS15140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 986 · GCF_003481245
AssemblyASM348124v1 · Scaffoldhaploid
Genome composition3 331 719 bp · 47,5% GCBlautia sp. TF10-30
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key