1 Response_reg#1
2-114 aa · 113 aa · 50.7% of protein
Raw token
Response_reg:2:1.09e-32:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD02_RS06425
Response regulator OmpR family
Blautia sp. TF10-30 · GCF_003481245
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481245#DXD02_RS06425Stable P2CS identifier used across views.
GenomeGCF_003481245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:2.55e-35:221:77:77- Raw architecture: Response_reg:2:1.09e-32:114:113:111#Trans_reg_C:148:2.55e-35:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481245::NZ_QUKM01000005.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47009-49348Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD02_06430RefSeq proteinWP_022462258.1
Context group ID
GCF_003481245::NZ_QUKM01000005.1::G00038Context members
DXD02_RS06420DXD02_RS06425
Partner locus tags
DXD02_RS06420DXD02_RS06425
Partner old locus tags
DXD02_06425DXD02_06430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022462258.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LE64Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LE64_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD02_RS06425Primary locus identifier stored in the genes table.
Old locus tagDXD02_06430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKM01000005.1Sequence record reported by the local genomic context database.
Genomic interval48 677-49 348 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 009-49 348 ntGCF_003481245::NZ_QUKM01000005.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481245::NZ_QUKM01000005.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKM01000005.1All displayed genes belong to this local TCS context.
Neighborhood span47 009-49 348 nt2 340 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 009 nt49 348 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD02_RS06420GCF_003481245#DXD02_RS06420
HKClassic
47 009-48 667 nt · Reverse (-)
DXD02_RS06425GCF_003481245#DXD02_RS06425
RROmpRCurrent focus
48 677-49 348 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS07255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1593214
Simplified PFAM architecture for RROC_1593214
PFAM domain coverage: 186 / 223 aa (83.4%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1593214
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS07255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 986 · GCF_003481245
AssemblyASM348124v1 · Scaffoldhaploid
Genome composition3 331 719 bp · 47,5% GCBlautia sp. TF10-30
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key