1 Response_reg#1
4-113 aa · 110 aa · 21.2% of protein
Raw token
Response_reg:4:1.72e-34:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD02_RS04075
Response regulator, unclassified
Blautia sp. TF10-30 · GCF_003481245
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481245#DXD02_RS04075Stable P2CS identifier used across views.
GenomeGCF_003481245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 519 aa (27.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
465-498 aa · 34 aa · 6.6% of protein
Raw token
HTH_AraC:465:0.000000584:498:34:42- Raw architecture: Response_reg:4:1.72e-34:113:110:111#HTH_AraC:465:0.000000584:498:34:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481245::NZ_QUKM01000003.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21525-24756Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD02_04075RefSeq proteinWP_118666435.1
Context group ID
GCF_003481245::NZ_QUKM01000003.1::G00029Context members
DXD02_RS04070DXD02_RS04075
Partner locus tags
DXD02_RS04070DXD02_RS04075
Partner old locus tags
DXD02_04070DXD02_04075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118666435.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD02_RS04075Primary locus identifier stored in the genes table.
Old locus tagDXD02_04075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKM01000003.1Sequence record reported by the local genomic context database.
Genomic interval23 197-24 756 nt1 560 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 525-24 756 ntGCF_003481245::NZ_QUKM01000003.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481245::NZ_QUKM01000003.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span21 525-24 756 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 525 nt24 756 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD02_RS04070GCF_003481245#DXD02_RS04070
HKClassic
21 525-23 234 nt · Reverse (-)
DXD02_RS04075GCF_003481245#DXD02_RS04075
RRunclassifiedCurrent focus
23 197-24 756 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481175#DXD26_RS11345Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127741
Simplified PFAM architecture for RROC_0127741
PFAM domain coverage: 190 / 519 aa (36.6%)
1 aa519 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[425-503]
- Domain count: 2
- Matched identifier: RROC_0127741
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 425-503 ; HTH_18 425-503
Cluster members and taxonomy
Representative gene: GCF_003481175#DXD26_RS11345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 986 · GCF_003481245
AssemblyASM348124v1 · Scaffoldhaploid
Genome composition3 331 719 bp · 47,5% GCBlautia sp. TF10-30
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key