1 CHASE#1
98-210 aa · 113 aa · 19.6% of protein
Raw token
CHASE:98:0.000000175:210:129:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS16445
Histidine kinase, Classic
Blautia sp. TF12-12AT · GCF_003481205
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003481205#DXD21_RS16445Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 577 aa (51.8%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 HisKA#2
319-385 aa · 67 aa · 11.6% of protein
Raw token
HisKA:319:1.07e-16:385:67:643 HATPase_c#3
431-549 aa · 119 aa · 20.6% of protein
Raw token
HATPase_c:431:1.71e-29:549:119:109- Raw architecture: CHASE:98:0.000000175:210:129:183#HisKA:319:1.07e-16:385:67:64#HATPase_c:431:1.71e-29:549:119:109
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003481205::NZ_QUKG01000002.1::G00018
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span285783-290778Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003481205::NZ_QUKG01000002.1::G00018Context members
DXD21_RS02925DXD21_RS16440DXD21_RS16445
Partner locus tags
DXD21_RS02925DXD21_RS16440DXD21_RS16445
Partner old locus tags
DXD21_02925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243106355.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS16445Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QUKG01000002.1Sequence record reported by the local genomic context database.
Genomic interval289 045-290 778 nt1 734 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span285 783-290 778 ntGCF_003481205::NZ_QUKG01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000002.1All displayed genes belong to this local TCS context.
Neighborhood span285 783-290 778 nt4 996 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
285 783 nt290 778 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD21_RS02925GCF_003481205#DXD21_RS02925
HKHybrid
285 783-288 611 nt · Reverse (-)
DXD21_RS16440GCF_003481205#DXD21_RS16440
RRCheY
288 746-289 048 nt · Reverse (-)
DXD21_RS16445GCF_003481205#DXD21_RS16445
HKClassicCurrent focus
289 045-290 778 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481175#DXD26_RS16235Use this link to inspect the representative gene detail.
PFAM architectureCHASE + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178483
Simplified PFAM architecture for HKOC_1178483
PFAM domain coverage: 286 / 577 aa (49.6%)
1 aa577 aa
CHASEHisKAHATPase_c
- Simplified architecture: CHASE + HisKA + HATPase_c
- Raw architecture: CHASE[102-204] | HisKA[320-385] | HATPase_c[431-547]
- Domain count: 3
- Matched identifier: HKOC_1178483
- Positioned domains: CHASE 102-204 ; HisKA 320-385 ; HATPase_c 431-547
Cluster members and taxonomy
Representative gene: GCF_003481175#DXD26_RS16235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key