1 HAMP#1
288-357 aa · 70 aa · 12.2% of protein
Raw token
HAMP:288:0.00000000000000436:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS13470
Histidine kinase, Classic
Blautia sp. TF12-12AT · GCF_003481205
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481205#DXD21_RS13470Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 576 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
373-445 aa · 73 aa · 12.7% of protein
Raw token
His_kinase:373:3.72e-29:445:73:803 HATPase_c#3
463-568 aa · 106 aa · 18.4% of protein
Raw token
HATPase_c:463:0.0000000000000043:568:115:109- Raw architecture: HAMP:288:0.00000000000000436:357:70:69#His_kinase:373:3.72e-29:445:73:80#HATPase_c:463:0.0000000000000043:568:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481205::NZ_QUKG01000023.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5418-8673Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_13480RefSeq proteinWP_158568333.1
Context group ID
GCF_003481205::NZ_QUKG01000023.1::G00023Context members
DXD21_RS17180DXD21_RS13470
Partner locus tags
DXD21_RS17180DXD21_RS13470
Partner old locus tags
DXD21_13475DXD21_13480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158568333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS13470Primary locus identifier stored in the genes table.
Old locus tagDXD21_13480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000023.1Sequence record reported by the local genomic context database.
Genomic interval6 943-8 673 nt1 731 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 418-8 673 ntGCF_003481205::NZ_QUKG01000023.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000023.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000023.1All displayed genes belong to this local TCS context.
Neighborhood span5 418-8 673 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 418 nt8 673 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD21_RS17180GCF_003481205#DXD21_RS17180
RRunclassified
5 418-6 941 nt · Forward (+)
DXD21_RS13470GCF_003481205#DXD21_RS13470
HKClassicCurrent focus
6 943-8 673 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460955#DWY63_RS06225Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184241
Simplified PFAM architecture for HKOC_1184241
PFAM domain coverage: 231 / 576 aa (40.1%)
1 aa576 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[306-357] | His_kinase[373-445] | HATPase_c[463-568]
- Domain count: 3
- Matched identifier: HKOC_1184241
- Positioned domains: HAMP 306-357 ; His_kinase 373-445 ; HATPase_c 463-568
Cluster members and taxonomy
Representative gene: GCF_003460955#DWY63_RS06225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key