1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.00000425:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS12745
Histidine kinase, Classic
Blautia sp. TF12-12AT · GCF_003481205
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481205#DXD21_RS12745Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 343 aa (50.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-340 aa · 106 aa · 30.9% of protein
Raw token
HATPase_c:235:2.71e-27:340:106:109- Raw architecture: HisKA:124:0.00000425:189:66:64#HATPase_c:235:2.71e-27:340:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481205::NZ_QUKG01000020.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8028-9739Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_12760RefSeq proteinWP_117500094.1
Context group ID
GCF_003481205::NZ_QUKG01000020.1::G00019Context members
DXD21_RS12745DXD21_RS12750
Partner locus tags
DXD21_RS12745DXD21_RS12750
Partner old locus tags
DXD21_12760DXD21_12765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117500094.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4W5Y6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4W5Y6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS12745Primary locus identifier stored in the genes table.
Old locus tagDXD21_12760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000020.1Sequence record reported by the local genomic context database.
Genomic interval8 028-9 059 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 028-9 739 ntGCF_003481205::NZ_QUKG01000020.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000020.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000020.1All displayed genes belong to this local TCS context.
Neighborhood span8 028-9 739 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 028 nt9 739 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD21_RS12745GCF_003481205#DXD21_RS12745
HKClassicCurrent focus
8 028-9 059 nt · Reverse (-)
DXD21_RS12750GCF_003481205#DXD21_RS12750
RROmpR
9 056-9 739 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS03755Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828816
Simplified PFAM architecture for HKOC_2828816
PFAM domain coverage: 172 / 343 aa (50.1%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-340]
- Domain count: 2
- Matched identifier: HKOC_2828816
- Positioned domains: HisKA 124-189 ; HATPase_c 235-340
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS03755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key