1 Response_reg#1
59-172 aa · 114 aa · 63.7% of protein
Raw token
Response_reg:59:1.61e-30:172:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS12155
Response regulator, CheY family
Blautia sp. TF12-12AT · GCF_003481205
ClassRRTypeCheYLength179 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481205#DXD21_RS12155Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length179 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 179 aa (63.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa179 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:59:1.61e-30:172:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481205::NZ_QUKG01000017.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span74416-74955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_12170RefSeq proteinWP_330425890.1
Context group ID
GCF_003481205::NZ_QUKG01000017.1::G00013Context members
DXD21_RS12155
Partner locus tags
DXD21_RS12155
Partner old locus tags
DXD21_12170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330425890.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS12155Primary locus identifier stored in the genes table.
Old locus tagDXD21_12170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000017.1Sequence record reported by the local genomic context database.
Genomic interval74 416-74 955 nt540 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 416-74 955 ntGCF_003481205::NZ_QUKG01000017.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000017.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000017.1All displayed genes belong to this local TCS context.
Neighborhood span74 416-74 955 nt540 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 416 nt74 955 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD21_RS12155GCF_003481205#DXD21_RS12155
RRCheYCurrent focus
74 416-74 955 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481175#DXD26_RS09540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2187709
Simplified PFAM architecture for RROC_2187709
PFAM domain coverage: 115 / 179 aa (64.2%)
1 aa179 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[59-173]
- Domain count: 1
- Matched identifier: RROC_2187709
- Positioned domains: Response_reg 59-173 ; Response_reg 59-173
Cluster members and taxonomy
Representative gene: GCF_003481175#DXD26_RS09540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key