1 GAF#1
9-149 aa · 141 aa · 23.7% of protein
Raw token
GAF:9:0.00000000132:149:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS09780
Histidine kinase, Classic
Blautia sp. TF12-12AT · GCF_003481205
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481205#DXD21_RS09780Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage326 / 595 aa (54.8%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 HisKA#2
317-383 aa · 67 aa · 11.3% of protein
Raw token
HisKA:317:0.00000000000000208:383:67:643 HATPase_c#3
432-549 aa · 118 aa · 19.8% of protein
Raw token
HATPase_c:432:1.42e-27:549:118:109- Raw architecture: GAF:9:0.00000000132:149:141:133#HisKA:317:0.00000000000000208:383:67:64#HATPase_c:432:1.42e-27:549:118:109
- Domain description: 1 GAF,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481205::NZ_QUKG01000012.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45939-48061Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_09795RefSeq proteinWP_243108218.1
Context group ID
GCF_003481205::NZ_QUKG01000012.1::G00007Context members
DXD21_RS09780DXD21_RS09785
Partner locus tags
DXD21_RS09780DXD21_RS09785
Partner old locus tags
DXD21_09795DXD21_09800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243108218.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS09780Primary locus identifier stored in the genes table.
Old locus tagDXD21_09795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000012.1Sequence record reported by the local genomic context database.
Genomic interval45 939-47 726 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 939-48 061 ntGCF_003481205::NZ_QUKG01000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000012.1All displayed genes belong to this local TCS context.
Neighborhood span45 939-48 061 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 939 nt48 061 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD21_RS09780GCF_003481205#DXD21_RS09780
HKClassicCurrent focus
45 939-47 726 nt · Forward (+)
DXD21_RS09785GCF_003481205#DXD21_RS09785
RRCheY
47 729-48 061 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481205#DXD21_RS09780The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1081887
Simplified PFAM architecture for HKOC_1081887
PFAM domain coverage: 319 / 595 aa (53.6%)
1 aa595 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[9-145] | HisKA[318-383] | HATPase_c[433-548]
- Domain count: 3
- Matched identifier: HKOC_1081887
- Positioned domains: GAF 9-145 ; HisKA 318-383 ; HATPase_c 433-548
Cluster members and taxonomy
Representative gene: GCF_003481205#DXD21_RS09780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key