1 Response_reg#1
5-117 aa · 113 aa · 23.4% of protein
Raw token
Response_reg:5:1.6e-31:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS09680
Response regulator, unclassified
Blautia sp. TF12-12AT · GCF_003481205
ClassRRTypeunclassifiedLength482 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481205#DXD21_RS09680Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 482 aa (40.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
377-418 aa · 42 aa · 8.7% of protein
Raw token
HTH_AraC:377:0.00000123:418:42:423 HTH_AraC#3
430-468 aa · 39 aa · 8.1% of protein
Raw token
HTH_AraC:430:0.000000119:468:39:42- Raw architecture: Response_reg:5:1.6e-31:117:113:111#HTH_AraC:377:0.00000123:418:42:42#HTH_AraC:430:0.000000119:468:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481205::NZ_QUKG01000012.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23582-26867Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_09695RefSeq proteinWP_118666836.1
Context group ID
GCF_003481205::NZ_QUKG01000012.1::G00006Context members
DXD21_RS09675DXD21_RS09680
Partner locus tags
DXD21_RS09675DXD21_RS09680
Partner old locus tags
DXD21_09690DXD21_09695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118666836.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS09680Primary locus identifier stored in the genes table.
Old locus tagDXD21_09695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000012.1Sequence record reported by the local genomic context database.
Genomic interval25 419-26 867 nt1 449 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 582-26 867 ntGCF_003481205::NZ_QUKG01000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000012.1All displayed genes belong to this local TCS context.
Neighborhood span23 582-26 867 nt3 286 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 582 nt26 867 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD21_RS09675GCF_003481205#DXD21_RS09675
HKClassic
23 582-25 447 nt · Forward (+)
DXD21_RS09680GCF_003481205#DXD21_RS09680
RRunclassifiedCurrent focus
25 419-26 867 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481175#DXD26_RS06950Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0179675
Simplified PFAM architecture for RROC_0179675
PFAM domain coverage: 190 / 482 aa (39.4%)
1 aa482 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[391-468]
- Domain count: 2
- Matched identifier: RROC_0179675
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 391-468 ; HTH_18 391-468
Cluster members and taxonomy
Representative gene: GCF_003481175#DXD26_RS06950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key