1 Response_reg#1
4-108 aa · 105 aa · 47.1% of protein
Raw token
Response_reg:4:9.04e-20:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS08070
Response regulator LytTR family
Blautia sp. TF12-12AT · GCF_003481205
ClassRRTypeLytTRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481205#DXD21_RS08070Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 223 aa (85.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-221 aa · 85 aa · 38.1% of protein
Raw token
LytTR:137:2.7e-20:221:91:98- Raw architecture: Response_reg:4:9.04e-20:108:108:111#LytTR:137:2.7e-20:221:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481205::NZ_QUKG01000009.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span52061-52732Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_08090RefSeq proteinWP_119206857.1
Context group ID
GCF_003481205::NZ_QUKG01000009.1::G00048Context members
DXD21_RS08070
Partner locus tags
DXD21_RS08070
Partner old locus tags
DXD21_08090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119206857.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS08070Primary locus identifier stored in the genes table.
Old locus tagDXD21_08090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000009.1Sequence record reported by the local genomic context database.
Genomic interval52 061-52 732 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 061-52 732 ntGCF_003481205::NZ_QUKG01000009.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000009.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000009.1All displayed genes belong to this local TCS context.
Neighborhood span52 061-52 732 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 061 nt52 732 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD21_RS08070GCF_003481205#DXD21_RS08070
RRLytTRCurrent focus
52 061-52 732 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS06045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600288
Simplified PFAM architecture for RROC_1600288
PFAM domain coverage: 189 / 223 aa (84.8%)
1 aa223 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[138-221]
- Domain count: 2
- Matched identifier: RROC_1600288
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 138-221 ; LytTR 138-221
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS06045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key