1 HisKA#1
140-204 aa · 65 aa · 17.5% of protein
Raw token
HisKA:140:0.000000000000879:204:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS05855
Histidine kinase, Classic
Blautia sp. TF12-12AT · GCF_003481205
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481205#DXD21_RS05855Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 371 aa (46.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
250-358 aa · 109 aa · 29.4% of protein
Raw token
HATPase_c:250:0.00000000000204:358:113:109- Raw architecture: HisKA:140:0.000000000000879:204:65:64#HATPase_c:250:0.00000000000204:358:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481205::NZ_QUKG01000006.1::G00042
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span50227-51342Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_05860RefSeq proteinWP_147399036.1
Context group ID
GCF_003481205::NZ_QUKG01000006.1::G00042Context members
DXD21_RS05855
Partner locus tags
DXD21_RS05855
Partner old locus tags
DXD21_05860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147399036.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS05855Primary locus identifier stored in the genes table.
Old locus tagDXD21_05860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000006.1Sequence record reported by the local genomic context database.
Genomic interval50 227-51 342 nt1 116 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 227-51 342 ntGCF_003481205::NZ_QUKG01000006.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000006.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span50 227-51 342 nt1 116 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 227 nt51 342 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD21_RS05855GCF_003481205#DXD21_RS05855
HKClassicCurrent focus
50 227-51 342 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481245#DXD02_RS08145Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132430
Simplified PFAM architecture for HKOC_1132430
PFAM domain coverage: 171 / 586 aa (29.2%)
1 aa586 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-419] | HATPase_c[465-571]
- Domain count: 2
- Matched identifier: HKOC_1132430
- Positioned domains: HisKA 356-419 ; HATPase_c 465-571
Cluster members and taxonomy
Representative gene: GCF_003481245#DXD02_RS08145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key