1 dCache_1#1
193-288 aa · 96 aa · 16.0% of protein
Raw token
dCache_1:193:0.0000313:288:101:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS05145
Histidine kinase, Classic
Blautia sp. TF12-12AT · GCF_003481205
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481205#DXD21_RS05145Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage349 / 600 aa (58.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-375 aa · 71 aa · 11.8% of protein
Raw token
HAMP:305:0.0000000000321:375:71:693 His_kinase#3
390-469 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:390:4.85e-28:469:80:804 HATPase_c#4
488-589 aa · 102 aa · 17.0% of protein
Raw token
HATPase_c:488:0.0000000000252:589:108:109- Raw architecture: dCache_1:193:0.0000313:288:101:195#HAMP:305:0.0000000000321:375:71:69#His_kinase:390:4.85e-28:469:80:80#HATPase_c:488:0.0000000000252:589:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481205::NZ_QUKG01000005.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75071-78399Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_05150RefSeq proteinWP_118601209.1
Context group ID
GCF_003481205::NZ_QUKG01000005.1::G00038Context members
DXD21_RS05145DXD21_RS05150
Partner locus tags
DXD21_RS05145DXD21_RS05150
Partner old locus tags
DXD21_05150DXD21_05155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118601209.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS05145Primary locus identifier stored in the genes table.
Old locus tagDXD21_05150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000005.1Sequence record reported by the local genomic context database.
Genomic interval75 071-76 873 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 071-78 399 ntGCF_003481205::NZ_QUKG01000005.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000005.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span75 071-78 399 nt3 329 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 071 nt78 399 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD21_RS05145GCF_003481205#DXD21_RS05145
HKClassicCurrent focus
75 071-76 873 nt · Reverse (-)
DXD21_RS05150GCF_003481205#DXD21_RS05150
RRunclassified
76 873-78 399 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479155#DWX26_RS08075Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053617
Simplified PFAM architecture for HKOC_1053617
PFAM domain coverage: 230 / 600 aa (38.3%)
1 aa600 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[328-374] | His_kinase[390-468] | HATPase_c[487-590]
- Domain count: 3
- Matched identifier: HKOC_1053617
- Positioned domains: HAMP 328-374 ; His_kinase 390-468 ; HATPase_c 487-590
Cluster members and taxonomy
Representative gene: GCF_003479155#DWX26_RS08075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key