1 Response_reg#1
4-116 aa · 113 aa · 26.3% of protein
Raw token
Response_reg:4:2.86e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD26_RS04665
Response regulator, unclassified
Blautia sp. TF12-31AT · GCF_003481175
ClassRRTypeunclassifiedLength430 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481175#DXD26_RS04665Stable P2CS identifier used across views.
GenomeGCF_003481175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length430 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 430 aa (26.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa430 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:2.86e-27:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481175::NZ_QUKF01000004.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span77551-80594Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD26_04665RefSeq proteinWP_158580117.1
Context group ID
GCF_003481175::NZ_QUKF01000004.1::G00035Context members
DXD26_RS04665DXD26_RS04670
Partner locus tags
DXD26_RS04665DXD26_RS04670
Partner old locus tags
DXD26_04665DXD26_04670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158580117.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD26_RS04665Primary locus identifier stored in the genes table.
Old locus tagDXD26_04665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKF01000004.1Sequence record reported by the local genomic context database.
Genomic interval77 551-78 843 nt1 293 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 551-80 594 ntGCF_003481175::NZ_QUKF01000004.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481175::NZ_QUKF01000004.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span77 551-80 594 nt3 044 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 551 nt80 594 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD26_RS04665GCF_003481175#DXD26_RS04665
RRunclassifiedCurrent focus
77 551-78 843 nt · Reverse (-)
DXD26_RS04670GCF_003481175#DXD26_RS04670
HKClassic
78 879-80 594 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481175#DXD26_RS04665The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0345297
Simplified PFAM architecture for RROC_0345297
PFAM domain coverage: 112 / 430 aa (26.0%)
1 aa430 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_0345297
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_003481175#DXD26_RS04665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 989 · GCF_003481175
AssemblyASM348117v1 · Contighaploid
Genome composition3 324 749 bp · 47,5% GCBlautia sp. TF12-31AT
Signal transduction countsGenes 76 · HK 37 · RR 35CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key