1 HisKA#1
497-563 aa · 67 aa · 9.3% of protein
Raw token
HisKA:497:1.32e-18:563:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS24990
Histidine kinase, Classic
Absiella sp. AM27-20 · GCF_003480975
ClassHKTypeClassicLength720 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480975#DW716_RS24990Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length720 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 720 aa (22.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa720 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
616-712 aa · 97 aa · 13.5% of protein
Raw token
HATPase_c:616:0.00000000000569:712:104:109- Raw architecture: HisKA:497:1.32e-18:563:67:64#HATPase_c:616:0.00000000000569:712:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480975::NZ_QUJU01000007.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8348-11224Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_06125RefSeq proteinWP_158552712.1
Context group ID
GCF_003480975::NZ_QUJU01000007.1::G00052Context members
DW716_RS24990DW716_RS06130
Partner locus tags
DW716_RS24990DW716_RS06130
Partner old locus tags
DW716_06125DW716_06130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158552712.1Primary protein accession used for annex mappings.
UniProt accessionA0A7G9GQ19Primary UniProt accession resolved in the annex database.
UniProt IDA0A7G9GQ19_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS24990Primary locus identifier stored in the genes table.
Old locus tagDW716_06125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000007.1Sequence record reported by the local genomic context database.
Genomic interval8 348-10 510 nt2 163 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 348-11 224 ntGCF_003480975::NZ_QUJU01000007.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000007.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000007.1All displayed genes belong to this local TCS context.
Neighborhood span8 348-11 224 nt2 877 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 348 nt11 224 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW716_RS24990GCF_003480975#DW716_RS24990
HKClassicCurrent focus
8 348-10 510 nt · Reverse (-)
DW716_RS06130GCF_003480975#DW716_RS06130
RROmpR
10 523-11 224 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS22230Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0732770
Simplified PFAM architecture for HKOC_0732770
PFAM domain coverage: 169 / 720 aa (23.5%)
1 aa720 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[497-563] | HATPase_c[610-711]
- Domain count: 2
- Matched identifier: HKOC_0732770
- Positioned domains: HisKA 497-563 ; HATPase_c 610-711
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS22230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key