1 Response_reg#1
4-110 aa · 107 aa · 45.9% of protein
Raw token
Response_reg:4:8.66e-17:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS14735
Response regulator LytTR family
Absiella sp. AM27-20 · GCF_003480975
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480975#DW716_RS14735Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 233 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-223 aa · 87 aa · 37.3% of protein
Raw token
LytTR:137:2.25e-19:223:92:98- Raw architecture: Response_reg:4:8.66e-17:110:111:111#LytTR:137:2.25e-19:223:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480975::NZ_QUJU01000022.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span43755-44456Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_14735RefSeq proteinWP_117454814.1
Context group ID
GCF_003480975::NZ_QUJU01000022.1::G00030Context members
DW716_RS14735
Partner locus tags
DW716_RS14735
Partner old locus tags
DW716_14735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117454814.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS14735Primary locus identifier stored in the genes table.
Old locus tagDW716_14735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000022.1Sequence record reported by the local genomic context database.
Genomic interval43 755-44 456 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 755-44 456 ntGCF_003480975::NZ_QUJU01000022.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000022.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000022.1All displayed genes belong to this local TCS context.
Neighborhood span43 755-44 456 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 755 nt44 456 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW716_RS14735GCF_003480975#DW716_RS14735
RRLytTRCurrent focus
43 755-44 456 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433745#DW113_RS15150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1090389
Simplified PFAM architecture for RROC_1090389
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[13-110] | LytTR[137-223]
- Domain count: 2
- Matched identifier: RROC_1090389
- Positioned domains: Response_reg 13-110 ; Response_reg 13-110 ; LytTR 137-223 ; LytTR 137-223
Cluster members and taxonomy
Representative gene: GCF_003433745#DW113_RS15150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key