1 HAMP#1
152-219 aa · 68 aa · 14.5% of protein
Raw token
HAMP:152:0.0000000000282:219:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS13330
Histidine kinase, Classic
Absiella sp. AM27-20 · GCF_003480975
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480975#DW716_RS13330Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 470 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-311 aa · 66 aa · 14.0% of protein
Raw token
HisKA:246:0.00000000446:311:66:643 HATPase_c#3
358-445 aa · 88 aa · 18.7% of protein
Raw token
HATPase_c:358:7.39e-18:445:88:109- Raw architecture: HAMP:152:0.0000000000282:219:68:69#HisKA:246:0.00000000446:311:66:64#HATPase_c:358:7.39e-18:445:88:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480975::NZ_QUJU01000019.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16385-18452Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_13330RefSeq proteinWP_117517381.1
Context group ID
GCF_003480975::NZ_QUJU01000019.1::G00022Context members
DW716_RS13325DW716_RS13330
Partner locus tags
DW716_RS13325DW716_RS13330
Partner old locus tags
DW716_13325DW716_13330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117517381.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7K7S3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7K7S3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS13330Primary locus identifier stored in the genes table.
Old locus tagDW716_13330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000019.1Sequence record reported by the local genomic context database.
Genomic interval17 040-18 452 nt1 413 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 385-18 452 ntGCF_003480975::NZ_QUJU01000019.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000019.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000019.1All displayed genes belong to this local TCS context.
Neighborhood span16 385-18 452 nt2 068 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 385 nt18 452 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW716_RS13325GCF_003480975#DW716_RS13325
RROmpR
16 385-17 053 nt · Forward (+)
DW716_RS13330GCF_003480975#DW716_RS13330
HKClassicCurrent focus
17 040-18 452 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434225#DW761_RS07985Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1719372
Simplified PFAM architecture for HKOC_1719372
PFAM domain coverage: 218 / 470 aa (46.4%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[170-220] | HisKA[247-310] | HATPase_c[358-460]
- Domain count: 3
- Matched identifier: HKOC_1719372
- Positioned domains: HAMP 170-220 ; HisKA 247-310 ; HATPase_c 358-460
Cluster members and taxonomy
Representative gene: GCF_003434225#DW761_RS07985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key