1 Response_reg#1
7-117 aa · 111 aa · 36.0% of protein
Raw token
Response_reg:7:2.63e-29:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS12875
Response regulator, PleD family
Absiella sp. AM27-20 · GCF_003480975
ClassRRTypePleDLength308 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480975#DW716_RS12875Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length308 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage264 / 308 aa (85.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa308 aa
Domain-by-domain annotation2 items
2 GGDEF#2
147-299 aa · 153 aa · 49.7% of protein
Raw token
GGDEF:147:4.79e-46:299:161:160- Raw architecture: Response_reg:7:2.63e-29:117:111:111#GGDEF:147:4.79e-46:299:161:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480975::NZ_QUJU01000018.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19214-22173Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_12875RefSeq proteinWP_117453064.1
Context group ID
GCF_003480975::NZ_QUJU01000018.1::G00016Context members
DW716_RS12870DW716_RS12875
Partner locus tags
DW716_RS12870DW716_RS12875
Partner old locus tags
DW716_12870DW716_12875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117453064.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R3R4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R3R4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS12875Primary locus identifier stored in the genes table.
Old locus tagDW716_12875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000018.1Sequence record reported by the local genomic context database.
Genomic interval21 247-22 173 nt927 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 214-22 173 ntGCF_003480975::NZ_QUJU01000018.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000018.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000018.1All displayed genes belong to this local TCS context.
Neighborhood span19 214-22 173 nt2 960 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 214 nt22 173 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW716_RS12870GCF_003480975#DW716_RS12870
HKCheA
19 214-21 229 nt · Reverse (-)
DW716_RS12875GCF_003480975#DW716_RS12875
RRPleDCurrent focus
21 247-22 173 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS03840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0557998
Simplified PFAM architecture for RROC_0557998
PFAM domain coverage: 262 / 308 aa (85.1%)
1 aa308 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[7-116] | GGDEF[147-298]
- Domain count: 2
- Matched identifier: RROC_0557998
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; GGDEF 147-298 ; GGDEF 147-298
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS03840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key