1 HAMP#1
168-235 aa · 68 aa · 15.0% of protein
Raw token
HAMP:168:0.000000000000553:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS10225
Histidine kinase, Classic
Absiella sp. AM27-20 · GCF_003480975
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480975#DW716_RS10225Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 453 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation3 items
2 HisKA#2
240-303 aa · 64 aa · 14.1% of protein
Raw token
HisKA:240:0.000000000000947:303:64:643 HATPase_c#3
356-448 aa · 93 aa · 20.5% of protein
Raw token
HATPase_c:356:0.0000000000008:448:101:109- Raw architecture: HAMP:168:0.000000000000553:235:69:69#HisKA:240:0.000000000000947:303:64:64#HATPase_c:356:0.0000000000008:448:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480975::NZ_QUJU01000013.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13063-15085Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_10225RefSeq proteinWP_117453365.1
Context group ID
GCF_003480975::NZ_QUJU01000013.1::G00008Context members
DW716_RS10220DW716_RS10225
Partner locus tags
DW716_RS10220DW716_RS10225
Partner old locus tags
DW716_10220DW716_10225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117453365.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS10225Primary locus identifier stored in the genes table.
Old locus tagDW716_10225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000013.1Sequence record reported by the local genomic context database.
Genomic interval13 724-15 085 nt1 362 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 063-15 085 ntGCF_003480975::NZ_QUJU01000013.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000013.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000013.1All displayed genes belong to this local TCS context.
Neighborhood span13 063-15 085 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 063 nt15 085 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW716_RS10220GCF_003480975#DW716_RS10220
RROmpR
13 063-13 722 nt · Forward (+)
DW716_RS10225GCF_003480975#DW716_RS10225
HKClassicCurrent focus
13 724-15 085 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS01410Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1927987
Simplified PFAM architecture for HKOC_1927987
PFAM domain coverage: 204 / 453 aa (45.0%)
1 aa453 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-234] | HisKA[240-303] | HATPase_c[354-446]
- Domain count: 3
- Matched identifier: HKOC_1927987
- Positioned domains: HAMP 188-234 ; HisKA 240-303 ; HATPase_c 354-446
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS01410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key