1 Response_reg#1
7-120 aa · 114 aa · 41.2% of protein
Raw token
Response_reg:7:1.68e-16:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS09620
Response regulator Spo0A family
Absiella sp. AM27-20 · GCF_003480975
ClassRRTypeSpo0ALength277 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480975#DW716_RS09620Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length277 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 277 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa277 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
157-260 aa · 104 aa · 37.5% of protein
Raw token
Spo0A_C:157:1.39e-60:260:104:104- Raw architecture: Response_reg:7:1.68e-16:120:114:111#Spo0A_C:157:1.39e-60:260:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480975::NZ_QUJU01000012.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9466-10299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_09620RefSeq proteinWP_117453645.1
Context group ID
GCF_003480975::NZ_QUJU01000012.1::G00007Context members
DW716_RS09620
Partner locus tags
DW716_RS09620
Partner old locus tags
DW716_09620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117453645.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RAE9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RAE9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS09620Primary locus identifier stored in the genes table.
Old locus tagDW716_09620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000012.1Sequence record reported by the local genomic context database.
Genomic interval9 466-10 299 nt834 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 466-10 299 ntGCF_003480975::NZ_QUJU01000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000012.1All displayed genes belong to this local TCS context.
Neighborhood span9 466-10 299 nt834 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 466 nt10 299 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW716_RS09620GCF_003480975#DW716_RS09620
RRSpo0ACurrent focus
9 466-10 299 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS12750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0601561
Simplified PFAM architecture for RROC_0601561
PFAM domain coverage: 217 / 277 aa (78.3%)
1 aa277 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[157-260]
- Domain count: 2
- Matched identifier: RROC_0601561
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 157-260 ; Spo0A_C 157-260
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS12750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key