1 HisKA#1
485-551 aa · 67 aa · 9.5% of protein
Raw token
HisKA:485:0.000000000000173:551:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS08615
Histidine kinase, Classic
Absiella sp. AM27-20 · GCF_003480975
ClassHKTypeClassicLength708 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480975#DW716_RS08615Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length708 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 708 aa (22.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa708 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
598-689 aa · 92 aa · 13.0% of protein
Raw token
HATPase_c:598:0.0000000000495:689:97:109- Raw architecture: HisKA:485:0.000000000000173:551:67:64#HATPase_c:598:0.0000000000495:689:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480975::NZ_QUJU01000010.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67056-69901Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_08615RefSeq proteinWP_117452936.1
Context group ID
GCF_003480975::NZ_QUJU01000010.1::G00003Context members
DW716_RS08615DW716_RS08620
Partner locus tags
DW716_RS08615DW716_RS08620
Partner old locus tags
DW716_08615DW716_08620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117452936.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R4T9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R4T9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS08615Primary locus identifier stored in the genes table.
Old locus tagDW716_08615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000010.1Sequence record reported by the local genomic context database.
Genomic interval67 056-69 182 nt2 127 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 056-69 901 ntGCF_003480975::NZ_QUJU01000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000010.1All displayed genes belong to this local TCS context.
Neighborhood span67 056-69 901 nt2 846 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 056 nt69 901 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW716_RS08615GCF_003480975#DW716_RS08615
HKClassicCurrent focus
67 056-69 182 nt · Reverse (-)
DW716_RS08620GCF_003480975#DW716_RS08620
RROmpR
69 188-69 901 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS04505Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0754721
Simplified PFAM architecture for HKOC_0754721
PFAM domain coverage: 158 / 708 aa (22.3%)
1 aa708 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[485-551] | HATPase_c[598-688]
- Domain count: 2
- Matched identifier: HKOC_0754721
- Positioned domains: HisKA 485-551 ; HATPase_c 598-688
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS04505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key